PH01000098G1840's details annotation
1.Annotation
ICBR annotation: RST1, putative, expressed
Blast result AT3G27670 : 2.10E-42
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000098
Strand: -
| Region | Start | End |
| gene | 1192924 | 1195823 |
| mRNA | 1192924 | 1195823 |
| exon | 1192924 | 1193725 |
| exon | 1193797 | 1194009 |
| exon | 1194114 | 1194202 |
| exon | 1194411 | 1194499 |
| exon | 1194580 | 1194710 |
| exon | 1194835 | 1195003 |
| exon | 1195136 | 1195823 |
| CDS | 1193636 | 1193725 |
| CDS | 1193797 | 1194009 |
| CDS | 1194114 | 1194202 |
| CDS | 1194411 | 1194499 |
| CDS | 1194580 | 1194710 |
| CDS | 1194835 | 1195003 |
| CDS | 1195136 | 1195266 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001599 | N-Glycan_biosynthesis membrane, |
| coexpression network | CFinderM001659 | protein import into nucleus, nuclear pore, |
| coexpression network | CFinderM001660 | SNARE_interactions_in_vesicular_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12530.7 | DUF3730 | 20 | 96 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.