CFinderM001659's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein import into nucleus,0.001967643GO:0006606
nuclear pore,0.007850672GO:0005643

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000098G1840ARM repeat superfamily proteinAT3G27670 (2.10E-42)
PH01000215G0080-- (-)
PH01000253G0210transducin family protein / WD-40 repeat family proteinAT4G00800 (0.00E+00)
PH01000706G0510nuclear pore anchorAT1G79280 (1.00E-119)
PH01001450G0190Late embryogenesis abundant protein (LEA) family proteinAT3G62580 (1.30E-83)
PH01001711G0360COP1-interacting protein 8AT5G64920 (4.20E-28)
PH01003052G0100-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000233details
CFinderM000513serine-type endopeptidase inhibitor activity,
extracellular region,
details
CFinderM000854details
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM000885SNF2 Transcription_Regulator(from iTAK)
valyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
valine-tRNA ligase activity,
protein binding,
aminoacyl-tRNA_editing_activity
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
tRNA aminoacylation for protein translation,
cellulose biosynthetic process,
details
CFinderM001012clathrin_coat
clathrin_coat_assembly
clathrin_binding
1-phosphatidylinositol_binding
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM001077SNARE_interactions_in_vesicular_transport
details
CFinderM001146TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
details
CFinderM001204Mre11 complex,
nucleolus,
DNA repair,
details
CFinderM001252SET Transcription_Regulator(from iTAK)
eukaryotic translation initiation factor 3 complex,
RNA_transport
protein binding,
details
CFinderM001315STE_STE-Pl (from iTAK)
details
CFinderM001463alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
GRAS Transcription_Regulator(from PlantTFDB)
fatty acid metabolic process,
3-hydroxyacyl-CoA_dehydrogenase_activity
details
CFinderM001527PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
details
CFinderM001599N-Glycan_biosynthesis
membrane,
details
CFinderM001660SNARE_interactions_in_vesicular_transport
details
CFinderM001661RNA_transport
RNA metabolic process,
details
CFinderM001779pseudouridine synthesis,
RNA modification,
RNA binding,
binding,
pseudouridine synthase activity,
details
CFinderM001787protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
cellular protein modification process,
binding,
details
CFinderM001855Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
details
CFinderM001861SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
details

4.Expression profilings