PH01000706G0510's details annotation
1.Annotation
ICBR annotation: nuclear-pore anchor, putative, expressed
Blast result AT1G79280 : 1.00E-119
Blast annotation: nuclear pore anchor
2.Location
Scaffold: PH01000706
Strand: +
| Region | Start | End |
| gene | 407163 | 423613 |
| mRNA | 407163 | 423613 |
| exon | 407163 | 408060 |
| exon | 409489 | 409537 |
| exon | 409705 | 409808 |
| exon | 409862 | 409942 |
| exon | 410435 | 410569 |
| exon | 410663 | 410767 |
| exon | 410894 | 411007 |
| exon | 411133 | 411211 |
| exon | 411368 | 411411 |
| exon | 411510 | 411583 |
| exon | 413007 | 413109 |
| exon | 413256 | 413390 |
| exon | 413465 | 413563 |
| exon | 414370 | 414411 |
| exon | 414486 | 414539 |
| exon | 414866 | 415045 |
| exon | 415122 | 415163 |
| exon | 416075 | 416119 |
| exon | 417230 | 417333 |
| exon | 417934 | 418212 |
| exon | 418740 | 418815 |
| exon | 419725 | 419799 |
| exon | 419882 | 420066 |
| exon | 420152 | 420254 |
| exon | 421414 | 421530 |
| exon | 423148 | 423613 |
| CDS | 407584 | 408060 |
| CDS | 409489 | 409537 |
| CDS | 409705 | 409808 |
| CDS | 409862 | 409942 |
| CDS | 410435 | 410569 |
| CDS | 410663 | 410767 |
| CDS | 410894 | 411007 |
| CDS | 411133 | 411211 |
| CDS | 411368 | 411411 |
| CDS | 411510 | 411583 |
| CDS | 413007 | 413109 |
| CDS | 413256 | 413390 |
| CDS | 413465 | 413563 |
| CDS | 414370 | 414411 |
| CDS | 414486 | 414539 |
| CDS | 414866 | 415045 |
| CDS | 415122 | 415163 |
| CDS | 416075 | 416119 |
| CDS | 417230 | 417333 |
| CDS | 417934 | 418212 |
| CDS | 418740 | 418815 |
| CDS | 419725 | 419799 |
| CDS | 419882 | 420066 |
| CDS | 420152 | 420254 |
| CDS | 421414 | 421530 |
| CDS | 423148 | 423264 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001659 | protein import into nucleus, nuclear pore, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07926.11 | TPR_MLP1_2 C | 883 | 998 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005643 | nuclear pore |
| GO:0006606 | protein import into nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.