Annotation of co-expression genes

PH01000253G0210's details annotation

1.Annotation

ICBR annotation: protein binding protein, putative, expressed

Blast result AT4G00800 : 0.00E+00
Blast annotation: transducin family protein / WD-40 repeat family protein

2.Location

Scaffold: PH01000253
Strand: -

RegionStartEnd
gene157846170076
mRNA157846170076
exon157846158601
exon158681158871
exon158973159425
exon159534159625
exon159985160003
exon160677160768
exon161131161186
exon161773161915
exon162077162178
exon162258162308
exon162602162703
exon162783162847
exon163357163990
exon164077164216
exon164309164441
exon164562164804
exon164911165204
exon166431167543
exon168409170076
CDS158148158601
CDS158681158871
CDS158973159425
CDS159534159625
CDS159985160003
CDS160677160768
CDS161131161186
CDS161773161915
CDS162077162178
CDS162258162308
CDS162602162703
CDS162783162847
CDS163357163990
CDS164077164216
CDS164309164441
CDS164562164804
CDS164911165204
CDS166431167543
CDS168409168513

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001012clathrin_coat
clathrin_coat_assembly
clathrin_binding
1-phosphatidylinositol_binding
WRKY Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001659protein import into nucleus,
nuclear pore,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12894.6ANAPC4_WD40411457
PF12816.6Vps8889945
PF12816.6Vps89411087

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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