CFinderM001204's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Mre11 complex,0.004685303GO:0030870
nucleolus,0.007484898GO:0005730
DNA repair,0.032643104GO:0006281

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000047G0250GTP-binding family proteinAT1G52980 (0.00E+00)
PH01000496G0830Ubiquitin-conjugating enzyme family proteinAT1G45050 (3.10E-85)
PH01000572G0520RNA-binding (RRM/RBD/RNP motifs) family proteinAT1G11650 (4.40E-88)
PH01000674G0700DNA-directed RNA polymerasesAT1G75670 (9.10E-41)
PH01001018G0350DNA repair-recombination protein (RAD50)AT2G31970 (5.20E-54)
PH01001450G0190Late embryogenesis abundant protein (LEA) family proteinAT3G62580 (1.30E-83)
PH01001556G0280Pentatricopeptide repeat (PPR) superfamily proteinAT4G35850 (2.00E-119)
PH01001835G0310evolutionarily conserved C-terminal region 2AT3G13460 (4.00E-103)
PH01003376G0110Bax inhibitor-1 family proteinAT4G15470 (5.10E-83)
PH01003687G0140Noc2p familyAT3G55510 (4.00E-115)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000671SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
details
CFinderM001146TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
details
CFinderM001315STE_STE-Pl (from iTAK)
details
CFinderM001463alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
GRAS Transcription_Regulator(from PlantTFDB)
fatty acid metabolic process,
3-hydroxyacyl-CoA_dehydrogenase_activity
details
CFinderM001523details
CFinderM001527PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
details
CFinderM001552HB-other Transcription_Regulator(from PlantTFDB)
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001567EIL Transcription_Regulator(from PlantTFDB)
tubulin-tyrosine_ligase_activity
cellular protein modification process,
details
CFinderM001659protein import into nucleus,
nuclear pore,
details
CFinderM001660SNARE_interactions_in_vesicular_transport
details
CFinderM001669CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
details
CFinderM001730Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001839GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001856GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
details
CFinderM001861SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
details
CFinderM001869DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
details
CFinderM001885Base_excision_repair
NAD+ ADP-ribosyltransferase activity,
GT29 GlycosylTransferases
protein ADP-ribosylation,
sialyltransferase activity,
protein ubiquitination,
protein glycosylation,
details
CFinderM001888Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
details
CFinderM001890clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
details

4.Expression profilings


Show details about module gene expression profiling