PH01001556G0280's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT4G35850 : 2.00E-119
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001556
Strand: -
| Region | Start | End |
| gene | 172700 | 180862 |
| mRNA | 172700 | 180862 |
| exon | 172700 | 173303 |
| exon | 173663 | 173764 |
| exon | 173934 | 174011 |
| exon | 174092 | 174157 |
| exon | 175219 | 175309 |
| exon | 175797 | 175873 |
| exon | 177143 | 177352 |
| exon | 177443 | 177560 |
| exon | 178511 | 178732 |
| exon | 179634 | 179802 |
| exon | 179860 | 180862 |
| CDS | 173190 | 173303 |
| CDS | 173663 | 173764 |
| CDS | 173934 | 174011 |
| CDS | 174092 | 174157 |
| CDS | 175219 | 175309 |
| CDS | 175797 | 175873 |
| CDS | 177143 | 177352 |
| CDS | 177443 | 177560 |
| CDS | 178511 | 178732 |
| CDS | 179634 | 179802 |
| CDS | 179860 | 179929 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001204 | Mre11 complex, nucleolus, DNA repair, |
| coexpression network | CFinderM001463 | alpha-Linolenic_acid_metabolism Fatty_acid_metabolism GRAS Transcription_Regulator(from PlantTFDB) fatty acid metabolic process, 3-hydroxyacyl-CoA_dehydrogenase_activity |
| coexpression network | CFinderM001567 | EIL Transcription_Regulator(from PlantTFDB) tubulin-tyrosine_ligase_activity cellular protein modification process, |
| coexpression network | CFinderM001885 | Base_excision_repair NAD+ ADP-ribosyltransferase activity, GT29 GlycosylTransferases protein ADP-ribosylation, sialyltransferase activity, protein ubiquitination, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.