PH01003376G0110's details annotation
1.Annotation
ICBR annotation: transmembrane BAX inhibitor motif-containing protein, putative, expressed
Blast result AT4G15470 : 5.10E-83
Blast annotation: Bax inhibitor-1 family protein
2.Location
Scaffold: PH01003376
Strand: -
| Region | Start | End |
| gene | 94715 | 98415 |
| mRNA | 94715 | 98415 |
| exon | 94715 | 96248 |
| exon | 96360 | 96517 |
| exon | 96603 | 96716 |
| exon | 97826 | 98415 |
| CDS | 96036 | 96248 |
| CDS | 96360 | 96517 |
| CDS | 96603 | 96716 |
| CDS | 97826 | 98135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000671 | SET Transcription_Regulator(from iTAK) DNA repair, Base_excision_repair nuclease activity, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001146 | TKL-Pl-2 (from iTAK) chromosome, Homologous_recombination DNA topological change, DNA topoisomerase activity, DNA topoisomerase type I activity, |
| coexpression network | CFinderM001204 | Mre11 complex, nucleolus, DNA repair, |
| coexpression network | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules GH9 Glycoside_Hydrolases phosphatidylinositol_dephosphorylation |
| coexpression network | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-2 (from iTAK) carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat clathrin_coat_assembly Pyrimidine_metabolism bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001839 | GPI anchor metabolic process, DNA methylation, DNA recombination, Base_excision_repair Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001856 | GPI anchor metabolic process, Base_excision_repair nuclease activity, |
| coexpression network | CFinderM001861 | SNARE_interactions_in_vesicular_transport acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
| coexpression network | CFinderM001869 | DNA recombination, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat_assembly clathrin_coat 1-phosphatidylinositol_binding clathrin_binding phospholipid binding, Pyrimidine_metabolism cell redox homeostasis, |
| coexpression network | CFinderM001890 | clathrin_coat_assembly clathrin_coat 1-phosphatidylinositol_binding clathrin_binding RNA_degradation regulation of transcription, DNA-dependent, phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01027.19 | Bax1-I | 54 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.