CFinderM001890's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
clathrin_coat_assembly0.010487208GO:0048268
clathrin_coat0.019226548GO:0030118
1-phosphatidylinositol_binding0.019954827GO:0005545
clathrin_binding0.019954827GO:0030276
RNA_degradation0.023608047KEGG
regulation of transcription, DNA-dependent,0.031031291GO:0006355
phospholipid binding,0.034835933GO:0005543

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000138G1440epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedAT2G25430 (0.00E+00)
PH01000289G0680RING/FYVE/PHD zinc finger superfamily proteinAT1G79350 (0.00E+00)
PH01000300G0290transcription regulator NOT2/NOT3/NOT5 family proteinAT5G18230 (0.00E+00)
PH01000464G0270Lung seven transmembrane receptor family proteinAT5G18520 (6.00E-141)
PH01000497G0620prenylated RAB acceptor 1.B4AT2G38360 (6.90E-27)
PH01003376G0110Bax inhibitor-1 family proteinAT4G15470 (5.10E-83)
PH01003570G0070actin-related protein 9AT5G43500 (1.70E-52)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000671SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
details
CFinderM001035GT14 GlycosylTransferases
CAMTA Transcription_Regulator(from PlantTFDB)
microtubule,
protein complex,
RNA_degradation
Phagosome
details
CFinderM001077SNARE_interactions_in_vesicular_transport
details
CFinderM001126negative_regulation_of_transcription,_DNA-templated
RNA_degradation
details
CFinderM001146TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
details
CFinderM001204Mre11 complex,
nucleolus,
DNA repair,
details
CFinderM001425chromosome organization,
negative_regulation_of_transcription,_DNA-templated
chromosome,
RNA_degradation
details
CFinderM001429negative_regulation_of_transcription,_DNA-templated
FMN binding,
details
CFinderM001669CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
details
CFinderM001730Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001755STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
details
CFinderM001807GT31 GlycosylTransferases
SNF2 Transcription_Regulator(from iTAK)
details
CFinderM001839GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001856GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
details
CFinderM001861SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
details
CFinderM001869DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
details
CFinderM001873GT47 GlycosylTransferases
details
CFinderM001888Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
details
CFinderM001891Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
details

4.Expression profilings