|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Alanine,_aspartate_and_glutamate_metabolism | 0.004166862 | KEGG | | carbamoyl_phosphate_biosynthetic_process | 0.005435969 | GO:0070409 | | glutamine_catabolic_process | 0.005435969 | GO:0006543 | | clathrin_coat | 0.021967363 | GO:0030118 | | membrane coat, | 0.023294423 | GO:0030117 | | clathrin_coat_assembly | 0.028947469 | GO:0048268 | | bZIP Transcription_Regulator(from PlantTFDB) | 0.040035319 | GFam | | RNA metabolic process, | 0.047393363 | GO:0016070 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000036G1820 | Trimeric LpxA-like enzyme | AT2G34970 (0.00E+00) | | PH01000065G2160 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT1G50140 (0.00E+00) | | PH01000068G0070 | Basic-leucine zipper (bZIP) transcription factor family protein | AT2G40950 (3.30E-66) | | PH01000138G1440 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | AT2G25430 (0.00E+00) | | PH01000497G0620 | prenylated RAB acceptor 1.B4 | AT2G38360 (6.90E-27) | | PH01000662G0340 | carbamoyl phosphate synthetase A | AT3G27740 (8.00E-104) | | PH01000714G0600 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | AT5G25800 (7.00E-169) | | PH01001249G0550 | delta-adaptin | AT1G48760 (1.00E-155) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM001054 | seryl-tRNA aminoacylation,
electron transport chain,
bZIP Transcription_Regulator(from PlantTFDB)
serine-tRNA ligase activity,
RNA metabolic process,
| details | | CFinderM001077 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules
GH77 Glycoside_Hydrolases
membrane coat,
4-alpha-glucanotransferase activity,
starch_binding
| details | | CFinderM001146 | TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
| details | | CFinderM001302 | membrane coat,
malic enzyme activity,
malate_dehydrogenase_(decarboxylating)_(NAD+)_activity
malate metabolic process,
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001483 | eukaryotic translation initiation factor 3 complex,
cytoplasm,
valyl-tRNA aminoacylation,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
G-protein coupled receptor signaling pathway,
Aminoacyl-tRNA_biosynthesis
| details | | CFinderM001515 | protein insertion into membrane,
transcription, DNA-dependent,
exonuclease activity,
| details | | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001661 | RNA_transport
RNA metabolic process,
| details | | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001755 | STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
| details | | CFinderM001780 | S-adenosylmethionine_biosynthetic_process
Cysteine_and_methionine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
methionine adenosyltransferase activity,
| details | | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details |
4.Expression profilings |
