PH01000662G0340's details annotation
1.Annotation
ICBR annotation: class I glutamine amidotransferase, putative, expressed
Blast result AT3G27740 : 8.00E-104
Blast annotation: carbamoyl phosphate synthetase A
2.Location
Scaffold: PH01000662
Strand: +
| Region | Start | End |
| gene | 195642 | 205129 |
| mRNA | 195642 | 205129 |
| exon | 195642 | 196654 |
| exon | 196920 | 196962 |
| exon | 197110 | 197236 |
| exon | 197969 | 198057 |
| exon | 198137 | 198197 |
| exon | 198274 | 198341 |
| exon | 198770 | 198879 |
| exon | 200090 | 200437 |
| exon | 200782 | 200828 |
| exon | 201235 | 201367 |
| exon | 203516 | 203681 |
| exon | 203793 | 205129 |
| CDS | 196496 | 196654 |
| CDS | 196920 | 196962 |
| CDS | 197110 | 197236 |
| CDS | 197969 | 198057 |
| CDS | 198137 | 198197 |
| CDS | 198274 | 198341 |
| CDS | 198770 | 198879 |
| CDS | 200090 | 200437 |
| CDS | 200782 | 200828 |
| CDS | 201235 | 201367 |
| CDS | 203516 | 203681 |
| CDS | 203793 | 203836 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-2 (from iTAK) carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat clathrin_coat_assembly Pyrimidine_metabolism bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat_assembly clathrin_coat 1-phosphatidylinositol_binding clathrin_binding phospholipid binding, Pyrimidine_metabolism cell redox homeostasis, |
| coexpression network | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat membrane coat, clathrin_coat_assembly bZIP Transcription_Regulator(from PlantTFDB) RNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00988.21 | CPSase_sm_chain | 77 | 183 |
| PF00117.27 | GATase | 223 | 329 |
| PF00117.27 | GATase | 394 | 457 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pyrimidine metabolism | carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] | ko00240 | K01956 |
| 296 Alanine, aspartate and glutamate metabolism | carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] | K01956 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006543 | glutamine catabolic process |
| GO:0070409 | carbamoyl phosphate biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.