|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Alanine,_aspartate_and_glutamate_metabolism | 0.001125158 | KEGG | | carbamoyl_phosphate_biosynthetic_process | 0.00156272 | GO:0070409 | | glutamine_catabolic_process | 0.00156272 | GO:0006543 | | clathrin_coat_assembly | 0.008325392 | GO:0048268 | | clathrin_coat | 0.008991424 | GO:0030118 | | 1-phosphatidylinositol_binding | 0.012488088 | GO:0005545 | | clathrin_binding | 0.012488088 | GO:0030276 | | phospholipid binding, | 0.021809802 | GO:0005543 | | Pyrimidine_metabolism | 0.030958385 | KEGG | | cell redox homeostasis, | 0.049900168 | GO:0045454 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000138G1440 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | AT2G25430 (0.00E+00) | | PH01000464G0270 | Lung seven transmembrane receptor family protein | AT5G18520 (6.00E-141) | | PH01000662G0340 | carbamoyl phosphate synthetase A | AT3G27740 (8.00E-104) | | PH01000674G0700 | DNA-directed RNA polymerases | AT1G75670 (9.10E-41) | | PH01000847G0370 | tetraticopeptide domain-containing thioredoxin | AT3G17880 (3.30E-99) | | PH01003376G0110 | Bax inhibitor-1 family protein | AT4G15470 (5.10E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000671 | SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001146 | TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
| details | | CFinderM001204 | Mre11 complex,
nucleolus,
DNA repair,
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001523 | | details | | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
| details | | CFinderM001730 | Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001755 | STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
| details | | CFinderM001807 | GT31 GlycosylTransferases
SNF2 Transcription_Regulator(from iTAK)
| details | | CFinderM001839 | GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001856 | GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
| details | | CFinderM001861 | SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
| details | | CFinderM001865 | mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
cytochrome-c oxidase activity,
Oxidative_phosphorylation
| details | | CFinderM001869 | DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details | | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
| details |
4.Expression profilings |
