PH01000847G0370's details annotation
1.Annotation
ICBR annotation: FAM10 family protein, putative, expressed
Blast result AT3G17880 : 3.30E-99
Blast annotation: tetraticopeptide domain-containing thioredoxin
2.Location
Scaffold: PH01000847
Strand: +
| Region | Start | End |
| gene | 260277 | 264239 |
| mRNA | 260277 | 264239 |
| exon | 260277 | 261717 |
| exon | 261895 | 261913 |
| exon | 262020 | 262229 |
| exon | 262332 | 262424 |
| exon | 262807 | 262854 |
| exon | 262958 | 263098 |
| exon | 263210 | 263323 |
| exon | 263580 | 263610 |
| exon | 263828 | 264239 |
| CDS | 261593 | 261717 |
| CDS | 261895 | 261913 |
| CDS | 262020 | 262229 |
| CDS | 262332 | 262424 |
| CDS | 262807 | 262854 |
| CDS | 262958 | 263098 |
| CDS | 263210 | 263323 |
| CDS | 263580 | 263610 |
| CDS | 263828 | 264159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001865 | mitochondrial respiratory chain complex IV, mitochondrial inner membrane, cytochrome-c oxidase activity, Oxidative_phosphorylation |
| coexpression network | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism carbamoyl_phosphate_biosynthetic_process glutamine_catabolic_process clathrin_coat_assembly clathrin_coat 1-phosphatidylinositol_binding clathrin_binding phospholipid binding, Pyrimidine_metabolism cell redox homeostasis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 283 | 365 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.