CFinderM001865's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mitochondrial respiratory chain complex IV,0.001125158GO:0005751
mitochondrial inner membrane,0.005617883GO:0005743
cytochrome-c oxidase activity,0.009277479GO:0004129
Oxidative_phosphorylation0.023952081KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000007G3570Molecular chaperone Hsp40/DnaJ family proteinAT3G17830 (1.50E-41)
PH01000186G1180-AT1G65720 (2.90E-19)
PH01000205G0570RNA helicase family proteinAT1G27900 (1.70E-62)
PH01000206G0390prenylated RAB acceptor 1.B4AT2G38360 (1.90E-40)
PH01000589G0240cytochrome c oxidase-relatedAT4G37830 (1.10E-27)
PH01000847G0370tetraticopeptide domain-containing thioredoxinAT3G17880 (3.30E-99)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001609RNA_transport
mRNA_surveillance_pathway
details
CFinderM001694TKL_CTR1-DRK-2 (from iTAK)
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
cytochrome-c oxidase activity,
histone acetyltransferase activity,
transcription cofactor activity,
details
CFinderM001797proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
mediator complex,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
MYB-related Transcription_Regulator(from iTAK)
RNA_polymerase_II_transcription_cofactor_activity
hydrogen ion transmembrane transporter activity,
Phagosome
Oxidative_phosphorylation
details
CFinderM001798proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
details
CFinderM001813GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
details
CFinderM001824rRNA modification,
rRNA methyltransferase activity,
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
tRNA aminoacylation,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
details
CFinderM001846rRNA modification,
rRNA methyltransferase activity,
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
tRNA aminoacylation,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
details
CFinderM001868Rab GTPase activator activity,
mitochondrial respiratory chain complex IV,
cytochrome-c oxidase activity,
mitochondrial inner membrane,
Oxidative_phosphorylation
RNA_degradation
details
CFinderM001888Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
details

4.Expression profilings