PH01000589G0240's details annotation
1.Annotation
ICBR annotation: cytochrome c oxidase-related, putative, expressed
Blast result AT4G37830 : 1.10E-27
Blast annotation: cytochrome c oxidase-related
2.Location
Scaffold: PH01000589
Strand: +
| Region | Start | End |
| gene | 118334 | 119220 |
| mRNA | 118334 | 119220 |
| exon | 118334 | 118568 |
| exon | 118672 | 118778 |
| exon | 118869 | 119220 |
| CDS | 118463 | 118568 |
| CDS | 118672 | 118778 |
| CDS | 118869 | 118958 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001694 | TKL_CTR1-DRK-2 (from iTAK) mitochondrial respiratory chain complex IV, mitochondrial inner membrane, Steroid_hormone_biosynthesis Fatty_acid_elongation Biosynthesis_of_unsaturated_fatty_acids cytochrome-c oxidase activity, histone acetyltransferase activity, transcription cofactor activity, |
| coexpression network | CFinderM001813 | GT48 GlycosylTransferases mitochondrial respiratory chain complex IV, mitochondrial inner membrane, 1,3-beta-D-glucan synthase complex, S-adenosylmethionine-dependent methyltransferase activity, cytochrome-c oxidase activity, steroid biosynthetic process, (1->3)-beta-D-glucan biosynthetic process, metabolic process, RNA_degradation Oxidative_phosphorylation cellular metabolic process, |
| coexpression network | CFinderM001865 | mitochondrial respiratory chain complex IV, mitochondrial inner membrane, cytochrome-c oxidase activity, Oxidative_phosphorylation |
| coexpression network | CFinderM001868 | Rab GTPase activator activity, mitochondrial respiratory chain complex IV, cytochrome-c oxidase activity, mitochondrial inner membrane, Oxidative_phosphorylation RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02046.14 | COX6A | 32 | 86 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | cytochrome c oxidase subunit 6a[EC:1.9.3.1] | ko00190 | K02266 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004129 | cytochrome-c oxidase activity |
| GO:0005743 | mitochondrial inner membrane |
| GO:0005751 | mitochondrial respiratory chain complex IV |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.