|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | GT48 GlycosylTransferases | 0.001499508 | GFam | | mitochondrial respiratory chain complex IV, | 0.004281852 | GO:0005751 | | mitochondrial inner membrane, | 0.017809014 | GO:0005743 | | 1,3-beta-D-glucan synthase complex, | 0.017809014 | GO:0000148 | | S-adenosylmethionine-dependent methyltransferase activity, | 0.018338082 | GO:0008757 | | cytochrome-c oxidase activity, | 0.018338082 | GO:0004129 | | steroid biosynthetic process, | 0.01949892 | GO:0006694 | | (1->3)-beta-D-glucan biosynthetic process, | 0.01949892 | GO:0006075 | | metabolic process, | 0.035209848 | GO:0008152 | | RNA_degradation | 0.035928121 | KEGG | | Oxidative_phosphorylation | 0.035928121 | KEGG | | cellular metabolic process, | 0.042613718 | GO:0044237 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000246G0470 | glucan synthase-like 8 | AT2G36850 (0) | | PH01000390G0610 | sterol methyltransferase 2 | AT1G20330 (2.00E-127) | | PH01000589G0240 | cytochrome c oxidase-related | AT4G37830 (1.10E-27) | | PH01001810G0170 | alpha/beta-Hydrolases superfamily protein | AT5G06570 (1.10E-79) | | PH01006233G0050 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | AT2G32415 (2.00E-160) | | PH01006475G0010 | SIN3-like 4 | AT1G70060 (1.00E-126) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000202 | peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM000355 | OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
| details | | CFinderM000357 | RNA_degradation
steroid biosynthetic process,
S-adenosylmethionine-dependent methyltransferase activity,
| details | | CFinderM000509 | Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
| details | | CFinderM000510 | Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
| details | | CFinderM000775 | Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
| details | | CFinderM000870 | cullin-RING ubiquitin ligase complex,
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000982 | RNA_degradation
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
cullin-RING ubiquitin ligase complex,
| details | | CFinderM001051 | cellular protein modification process,
binding,
| details | | CFinderM001222 | aminoacylase activity,
RNA_degradation
| details | | CFinderM001489 | Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
| details | | CFinderM001576 | RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
| details | | CFinderM001694 | TKL_CTR1-DRK-2 (from iTAK)
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
cytochrome-c oxidase activity,
histone acetyltransferase activity,
transcription cofactor activity,
| details | | CFinderM001864 | GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
| details | | CFinderM001865 | mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
cytochrome-c oxidase activity,
Oxidative_phosphorylation
| details | | CFinderM001868 | Rab GTPase activator activity,
mitochondrial respiratory chain complex IV,
cytochrome-c oxidase activity,
mitochondrial inner membrane,
Oxidative_phosphorylation
RNA_degradation
| details | | CFinderM001876 | Spliceosome
| details |
4.Expression profilings |
