|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | RNA_degradation | 0.001779599 | KEGG | | folic acid-containing compound biosynthetic process, | 0.031366408 | GO:0009396 | | methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity | 0.036601804 | GO:0004488 | | cullin-RING ubiquitin ligase complex, | 0.037025356 | GO:0031461 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000149G0250 | alpha/beta-Hydrolases superfamily protein | AT1G49640 (9.70E-61) | | PH01000634G0170 | DNA-binding family protein | AT4G34430 (8.00E-156) | | PH01000725G0030 | cullin 1 | AT4G02570 (0.00E+00) | | PH01000732G0180 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | AT2G32070 (2.00E-115) | | PH01001592G0120 | Amino acid dehydrogenase family protein | AT3G12290 (3.00E-129) | | PH01003874G0020 | purple acid phosphatase 22 | AT3G52820 (5.10E-63) | | PH01006233G0050 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | AT2G32415 (2.00E-160) | | PH01006475G0010 | SIN3-like 4 | AT1G70060 (1.00E-126) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000202 | peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM000260 | Glycine,_serine_and_threonine_metabolism
nucleus,
Glyoxylate_and_dicarboxylate_metabolism
RNA_degradation
cofactor binding,
| details | | CFinderM000302 | nucleosome assembly,
nucleosome,
protein_heterodimerization_activity
LBD Transcription_Regulator(from PlantTFDB)
RNA_degradation
nucleic acid binding,
| details | | CFinderM000355 | OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
| details | | CFinderM000357 | RNA_degradation
steroid biosynthetic process,
S-adenosylmethionine-dependent methyltransferase activity,
| details | | CFinderM000509 | Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
| details | | CFinderM000510 | Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
| details | | CFinderM000559 | regulation of cell shape,
cell division,
Ino80_complex
Aminoacyl-tRNA_biosynthesis
carbon-nitrogen ligase activity, with glutamine as amido-N-donor,
ligase activity,
chromatin binding,
| details | | CFinderM000775 | Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
| details | | CFinderM000870 | cullin-RING ubiquitin ligase complex,
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000897 | Pentose_and_glucuronate_interconversions
Ascorbate_and_aldarate_metabolism
intramolecular lyase activity,
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM001051 | cellular protein modification process,
binding,
| details | | CFinderM001222 | aminoacylase activity,
RNA_degradation
| details | | CFinderM001489 | Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
| details | | CFinderM001576 | RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
| details | | CFinderM001670 | isoprenoid biosynthetic process,
| details | | CFinderM001813 | GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
| details | | CFinderM001864 | GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
| details |
4.Expression profilings |
