PH01006475G0010's details annotation
1.Annotation
ICBR annotation: transcriptional repressor, putative, expressed
Blast result AT1G70060 : 1.00E-126
Blast annotation: SIN3-like 4
2.Location
Scaffold: PH01006475
Strand: +
| Region | Start | End |
| gene | 7887 | 12663 |
| mRNA | 7887 | 12663 |
| exon | 7887 | 8368 |
| exon | 8443 | 8597 |
| exon | 9117 | 9244 |
| exon | 9365 | 9619 |
| exon | 10069 | 12663 |
| CDS | 8126 | 8368 |
| CDS | 8443 | 8597 |
| CDS | 9117 | 9244 |
| CDS | 9365 | 9619 |
| CDS | 10069 | 12050 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000870 | cullin-RING ubiquitin ligase complex, folic acid-containing compound biosynthetic process, methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000982 | RNA_degradation folic acid-containing compound biosynthetic process, methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity cullin-RING ubiquitin ligase complex, |
| coexpression network | CFinderM001051 | cellular protein modification process, binding, |
| coexpression network | CFinderM001813 | GT48 GlycosylTransferases mitochondrial respiratory chain complex IV, mitochondrial inner membrane, 1,3-beta-D-glucan synthase complex, S-adenosylmethionine-dependent methyltransferase activity, cytochrome-c oxidase activity, steroid biosynthetic process, (1->3)-beta-D-glucan biosynthetic process, metabolic process, RNA_degradation Oxidative_phosphorylation cellular metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08295.11 | Sin3_corepress | 69 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.