CFinderM001146's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
TKL-Pl-2 (from iTAK)0.000437541GFam
chromosome,0.006110659GO:0005694
Homologous_recombination0.011756157KEGG
DNA topological change,0.01375801GO:0006265
DNA topoisomerase activity,0.026139758GO:0003916
DNA topoisomerase type I activity,0.026139758GO:0003917

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000037G0880-- (-)
PH01000215G0080-- (-)
PH01000497G0620prenylated RAB acceptor 1.B4AT2G38360 (6.90E-27)
PH01002627G0320DNA topoisomerase, type IA, coreAT2G32000 (0.00E+00)
PH01002850G0100Leucine-rich repeat protein kinase family proteinAT1G04210 (1.00E-158)
PH01003376G0110Bax inhibitor-1 family proteinAT4G15470 (5.10E-83)
PH01011016G0010BTB/POZ domain with WD40/YVTN repeat-like proteinAT2G24240 (3.70E-93)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000233details
CFinderM000513serine-type endopeptidase inhibitor activity,
extracellular region,
details
CFinderM000671SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
details
CFinderM000854details
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM001077SNARE_interactions_in_vesicular_transport
details
CFinderM001204Mre11 complex,
nucleolus,
DNA repair,
details
CFinderM001429negative_regulation_of_transcription,_DNA-templated
FMN binding,
details
CFinderM001659protein import into nucleus,
nuclear pore,
details
CFinderM001660SNARE_interactions_in_vesicular_transport
details
CFinderM001661RNA_transport
RNA metabolic process,
details
CFinderM001669CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
details
CFinderM001730Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001787protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
cellular protein modification process,
binding,
details
CFinderM001839GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001856GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
details
CFinderM001861SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
details
CFinderM001869DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
details
CFinderM001888Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
details
CFinderM001890clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
details
CFinderM001891Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
details

4.Expression profilings