PH01011016G0010's details annotation
1.Annotation
ICBR annotation: B4-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed
Blast result AT2G24240 : 3.70E-93
Blast annotation: BTB/POZ domain with WD40/YVTN repeat-like protein
2.Location
Scaffold: PH01011016
Strand: +
| Region | Start | End |
| gene | 281 | 1421 |
| mRNA | 281 | 1421 |
| exon | 281 | 1421 |
| CDS | 281 | 957 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001146 | TKL-Pl-2 (from iTAK) chromosome, Homologous_recombination DNA topological change, DNA topoisomerase activity, DNA topoisomerase type I activity, |
| coexpression network | CFinderM001661 | RNA_transport RNA metabolic process, |
| coexpression network | CFinderM001787 | protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, cellular protein modification process, binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.