CFinderM001661's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
RNA_transport0.034276561KEGG
RNA metabolic process,0.041983224GO:0016070

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000036G1820Trimeric LpxA-like enzymeAT2G34970 (0.00E+00)
PH01000128G1190-AT1G42440 (0.00E+00)
PH01000286G0870ubiquitin-specific protease 23AT5G57990 (1.30E-73)
PH01000609G0570RNA helicase family proteinAT1G33390 (0.00E+00)
PH01001711G0360COP1-interacting protein 8AT5G64920 (4.20E-28)
PH01003052G0100-- (-)
PH01011016G0010BTB/POZ domain with WD40/YVTN repeat-like proteinAT2G24240 (3.70E-93)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM000885SNF2 Transcription_Regulator(from iTAK)
valyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
valine-tRNA ligase activity,
protein binding,
aminoacyl-tRNA_editing_activity
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
tRNA aminoacylation for protein translation,
cellulose biosynthetic process,
details
CFinderM001054seryl-tRNA aminoacylation,
electron transport chain,
bZIP Transcription_Regulator(from PlantTFDB)
serine-tRNA ligase activity,
RNA metabolic process,
details
CFinderM001146TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
details
CFinderM001252SET Transcription_Regulator(from iTAK)
eukaryotic translation initiation factor 3 complex,
RNA_transport
protein binding,
details
CFinderM001315STE_STE-Pl (from iTAK)
details
CFinderM001429negative_regulation_of_transcription,_DNA-templated
FMN binding,
details
CFinderM001567EIL Transcription_Regulator(from PlantTFDB)
tubulin-tyrosine_ligase_activity
cellular protein modification process,
details
CFinderM001641bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001659protein import into nucleus,
nuclear pore,
details
CFinderM001660SNARE_interactions_in_vesicular_transport
details
CFinderM001779pseudouridine synthesis,
RNA modification,
RNA binding,
binding,
pseudouridine synthase activity,
details
CFinderM001787protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
cellular protein modification process,
binding,
details
CFinderM001855Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
details
CFinderM001891Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
details

4.Expression profilings