PH01003052G0100's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003052
Strand: +
| Region | Start | End |
| gene | 84136 | 86917 |
| mRNA | 84136 | 86917 |
| exon | 84136 | 84502 |
| exon | 84608 | 84957 |
| exon | 85281 | 86917 |
| CDS | 84436 | 84502 |
| CDS | 84608 | 84957 |
| CDS | 85281 | 85565 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001315 | STE_STE-Pl (from iTAK) |
| coexpression network | CFinderM001659 | protein import into nucleus, nuclear pore, |
| coexpression network | CFinderM001660 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001661 | RNA_transport RNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14447.5 | Prok-RING_4 | 181 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.