|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | seryl-tRNA aminoacylation, | 0.016306887 | GO:0006434 | | electron transport chain, | 0.026480062 | GO:0022900 | | bZIP Transcription_Regulator(from PlantTFDB) | 0.03012873 | GFam | | serine-tRNA ligase activity, | 0.040568112 | GO:0004828 | | RNA metabolic process, | 0.047446683 | GO:0016070 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000036G1820 | Trimeric LpxA-like enzyme | AT2G34970 (0.00E+00) | | PH01000071G1120 | protein serine/threonine kinases;ATP binding;catalytics | AT3G51270 (6.00E-137) | | PH01000307G0680 | negative regulator of systemic acquired resistance (SNI1) | AT4G18470 (3.10E-42) | | PH01000436G0190 | Basic-leucine zipper (bZIP) transcription factor family protein | AT2G40950 (2.60E-69) | | PH01000589G0690 | succinate dehydrogenase 1-1 | AT5G66760 (0.00E+00) | | PH01000718G0270 | seryl-tRNA synthetase / serine--tRNA ligase | AT5G27470 (9.00E-178) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM001055 | NF-YB Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001553 | seryl-tRNA aminoacylation,
serine-tRNA ligase activity,
Regulation_of_autophagy
tRNA aminoacylation for protein translation,
ribonuclease activity,
Aminoacyl-tRNA_biosynthesis
| details | | CFinderM001641 | bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001661 | RNA_transport
RNA metabolic process,
| details | | CFinderM001759 | Citrate_cycle_(TCA_cycle)
tricarboxylic acid cycle enzyme complex,
phenylalanyl-tRNA aminoacylation,
fumarate metabolic process,
tricarboxylic acid cycle,
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
fumarate hydratase activity,
tRNA binding,
Carbon_fixation_pathways_in_prokaryotes
Aminoacyl-tRNA_biosynthesis
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
| details | | CFinderM001760 | Citrate_cycle_(TCA_cycle)
oxoglutarate dehydrogenase complex,
transferase activity, transferring acyl groups,
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
dihydrolipoyllysine-residue succinyltransferase activity,
tricarboxylic acid cycle,
electron transport chain,
cellular protein modification process,
Lysine_degradation
| details | | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
| details | | CFinderM001896 | seryl-tRNA aminoacylation,
serine-tRNA ligase activity,
5S rRNA binding,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
| details |
4.Expression profilings |
