PH01000307G0680's details annotation
1.Annotation
ICBR annotation: SNI1, putative, expressed
Blast result AT4G18470 : 3.10E-42
Blast annotation: negative regulator of systemic acquired resistance (SNI1)
2.Location
Scaffold: PH01000307
Strand: -
| Region | Start | End |
| gene | 517791 | 526986 |
| mRNA | 517791 | 526986 |
| exon | 517791 | 518084 |
| exon | 518508 | 518573 |
| exon | 519168 | 519237 |
| exon | 519314 | 519384 |
| exon | 519457 | 519660 |
| exon | 519857 | 519947 |
| exon | 520151 | 520226 |
| exon | 520901 | 520982 |
| exon | 521667 | 521735 |
| exon | 522112 | 522201 |
| exon | 522325 | 522387 |
| exon | 524231 | 524324 |
| exon | 525015 | 525097 |
| exon | 526265 | 526986 |
| CDS | 518007 | 518084 |
| CDS | 518508 | 518573 |
| CDS | 519168 | 519237 |
| CDS | 519314 | 519384 |
| CDS | 519457 | 519660 |
| CDS | 519857 | 519947 |
| CDS | 520151 | 520226 |
| CDS | 520901 | 520982 |
| CDS | 521667 | 521735 |
| CDS | 522112 | 522201 |
| CDS | 522325 | 522387 |
| CDS | 524231 | 524324 |
| CDS | 525015 | 525097 |
| CDS | 526265 | 526636 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001054 | seryl-tRNA aminoacylation, electron transport chain, bZIP Transcription_Regulator(from PlantTFDB) serine-tRNA ligase activity, RNA metabolic process, |
| coexpression network | CFinderM001759 | Citrate_cycle_(TCA_cycle) tricarboxylic acid cycle enzyme complex, phenylalanyl-tRNA aminoacylation, fumarate metabolic process, tricarboxylic acid cycle, tRNA aminoacylation, phenylalanine-tRNA ligase activity, fumarate hydratase activity, tRNA binding, Carbon_fixation_pathways_in_prokaryotes Aminoacyl-tRNA_biosynthesis Pyruvate_metabolism Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM001760 | Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase complex, transferase activity, transferring acyl groups, protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, dihydrolipoyllysine-residue succinyltransferase activity, tricarboxylic acid cycle, electron transport chain, cellular protein modification process, Lysine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.