CFinderM000697's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Valine,_leucine_and_isoleucine_biosynthesis0.012903772KEGG
Valine,_leucine_and_isoleucine_degradation0.012903772KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000052G0690Lung seven transmembrane receptor family proteinAT1G72480 (6.00E-176)
PH01000094G0800-- (-)
PH01000244G0520ribosomal protein L5AT3G25520 (2.00E-128)
PH01000325G0810time for coffeeAT3G22380 (3.60E-76)
PH01000361G0850TatD related DNaseAT3G52390 (3.00E-138)
PH01000589G0690succinate dehydrogenase 1-1AT5G66760 (0.00E+00)
PH01000718G0270seryl-tRNA synthetase / serine--tRNA ligaseAT5G27470 (9.00E-178)
PH01000721G0360-- (-)
PH01001047G0390translation elongation factor Ts (EF-Ts), putativeAT4G11120 (9.50E-93)
PH01001352G0180RNI-like superfamily proteinAT5G40470 (6.40E-47)
PH01001442G0120branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)AT5G65780 (6.00E-108)
PH01001739G0220SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinAT3G10210 (2.40E-67)
PH01001992G0080D6 protein kinase like 2AT5G47750 (0)
PH01002028G0330B-S glucosidase 44AT3G18080 (0.00E+00)
PH01002725G0180Uncharacterised conserved protein (UCP012943)AT5G54540 (4.80E-22)
PH01002889G0070auxin signaling F-box 2AT3G26810 (0.00E+00)
PH01003039G0010sterol methyltransferase 1AT5G13710 (5.00E-165)
PH01004002G0150ORMDL family proteinAT1G01230 (2.60E-73)
PH01005293G0030polypyrimidine tract-binding protein 1AT3G01150 (3.00E-157)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000647RLK-Pelle_RLCK-VIIa-2 (from iTAK)
details
CFinderM000724HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
details
CFinderM000747microtubule,
protein complex,
microtubule-based process,
protein polymerization,
details
CFinderM000861Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
Pantothenate_and_CoA_biosynthesis
branched chain family amino acid metabolic process,
AGC_RSK-2 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
iron-sulfur cluster assembly,
branched-chain-amino-acid transaminase activity,
details
CFinderM000905Sulfur_relay_system
details
CFinderM001054seryl-tRNA aminoacylation,
electron transport chain,
bZIP Transcription_Regulator(from PlantTFDB)
serine-tRNA ligase activity,
RNA metabolic process,
details
CFinderM001055NF-YB Transcription_Regulator(from PlantTFDB)
details
CFinderM001111vacuolar proton-transporting V-type ATPase, V1 domain,
C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
binding,
proton-transporting ATPase activity, rotational mechanism,
ATP hydrolysis coupled proton transport,
details
CFinderM0014913,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
details
CFinderM001553seryl-tRNA aminoacylation,
serine-tRNA ligase activity,
Regulation_of_autophagy
tRNA aminoacylation for protein translation,
ribonuclease activity,
Aminoacyl-tRNA_biosynthesis
details
CFinderM001587Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
nucleoside_diphosphate_phosphorylation
branched chain family amino acid metabolic process,
CTP biosynthetic process,
GTP biosynthetic process,
UTP biosynthetic process,
nucleoside diphosphate kinase activity,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
details
CFinderM001591Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
details
CFinderM001593vacuolar proton-transporting V-type ATPase, V1 domain,
ATP hydrolysis coupled proton transport,
proton-transporting ATPase activity, rotational mechanism,
binding,
details
CFinderM001682RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
sterol_24-C-methyltransferase_activity
steroid biosynthetic process,
single-stranded DNA binding,
details
CFinderM001683Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
details
CFinderM001696phenylalanyl-tRNA aminoacylation,
microtubule,
mitochondrial outer membrane,
protein complex,
Fatty_acid_metabolism
Peroxisome
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA aminoacylation,
protein polymerization,
microtubule-based process,
tRNA binding,
details
CFinderM001698Steroid_biosynthesis
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
single-stranded DNA binding,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
WRKY Transcription_Regulator(from PlantTFDB)
dephosphorylation,
steroid biosynthetic process,
details
CFinderM001699Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
details
CFinderM001708Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
details
CFinderM001757RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein phosphorylation,
details
CFinderM001760Citrate_cycle_(TCA_cycle)
oxoglutarate dehydrogenase complex,
transferase activity, transferring acyl groups,
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
dihydrolipoyllysine-residue succinyltransferase activity,
tricarboxylic acid cycle,
electron transport chain,
cellular protein modification process,
Lysine_degradation
details
CFinderM001774regulation of Rab GTPase activity,
Rab GTPase activator activity,
intracellular,
DNA metabolic process,
isoprenoid biosynthetic process,
nuclease activity,
Nucleotide_excision_repair
Terpenoid_backbone_biosynthesis
details
CFinderM001843Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
PLATZ Transcription_Regulator(from iTAK)
protein complex,
microtubule,
TRAF Transcription_Regulator(from iTAK)
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
protein polymerization,
translational initiation,
microtubule-based process,
Pantothenate_and_CoA_biosynthesis
structural constituent of cytoskeleton,
details
CFinderM001871Steroid_biosynthesis
steroid biosynthetic process,
sterol_24-C-methyltransferase_activity
details
CFinderM0018723,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
details
CFinderM001886Steroid_biosynthesis
ubiquitin ligase complex,
sterol_24-C-methyltransferase_activity
dephosphorylation,
steroid biosynthetic process,
mRNA_surveillance_pathway
protein ubiquitination,
protein dephosphorylation,
details
CFinderM001895phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
details
CFinderM001896seryl-tRNA aminoacylation,
serine-tRNA ligase activity,
5S rRNA binding,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
details

4.Expression profilings


Show details about module gene expression profiling