|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Valine,_leucine_and_isoleucine_biosynthesis | 0.00249763 | KEGG | | Valine,_leucine_and_isoleucine_degradation | 0.00249763 | KEGG | | HB-other Transcription_Regulator(from PlantTFDB) | 0.01144997 | GFam | | TALE Transcription_Regulator(from PlantTFDB) | 0.01144997 | GFam | | sterol_24-C-methyltransferase_activity | 0.012056876 | GO:0003838 | | 5S rRNA binding, | 0.012056876 | GO:0008097 | | endodeoxyribonuclease activity, producing 5'-phosphomonoesters, | 0.012056876 | GO:0016888 | | branched-chain-amino-acid transaminase activity, | 0.013561442 | GO:0004084 | | Pantothenate_and_CoA_biosynthesis | 0.018062034 | KEGG | | Steroid_biosynthesis | 0.018062034 | KEGG | | steroid biosynthetic process, | 0.022468922 | GO:0006694 | | branched chain family amino acid metabolic process, | 0.022468922 | GO:0009081 | | ion transport, | 0.022468922 | GO:0006811 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000043G1720 | KNOTTED1-like homeobox gene 3 | AT5G25220 (2.40E-62) | | PH01000244G0520 | ribosomal protein L5 | AT3G25520 (2.00E-128) | | PH01000361G0850 | TatD related DNase | AT3G52390 (3.00E-138) | | PH01001442G0120 | branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) | AT5G65780 (6.00E-108) | | PH01001796G0400 | cyclic nucleotide gated channel 1 | AT5G53130 (2.00E-164) | | PH01003039G0010 | sterol methyltransferase 1 | AT5G13710 (5.00E-165) | | PH01003244G0180 | XB3 ortholog 5 in Arabidopsis thaliana | AT3G23280 (3.10E-79) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000846 | TALE Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
Peroxisome
| details | | CFinderM000861 | Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
Pantothenate_and_CoA_biosynthesis
branched chain family amino acid metabolic process,
AGC_RSK-2 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
iron-sulfur cluster assembly,
branched-chain-amino-acid transaminase activity,
| details | | CFinderM001301 | TALE Transcription_Regulator(from PlantTFDB)
SBP Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
glycogen biosynthetic process,
regulation of actin filament polymerization,
cytoskeleton,
| details | | CFinderM001409 | Whirly Transcription_Regulator(from PlantTFDB)
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
phosphatidylinositol N-acetylglucosaminyltransferase activity,
GPI anchor biosynthetic process,
| details | | CFinderM001529 | Fanconi_anaemia_nuclear_complex
DNA repair,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
nucleoside_diphosphate_phosphorylation
branched chain family amino acid metabolic process,
CTP biosynthetic process,
GTP biosynthetic process,
UTP biosynthetic process,
nucleoside diphosphate kinase activity,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
| details | | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
| details | | CFinderM001633 | TALE Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
Peroxisome
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001656 | GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
| details | | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
sterol_24-C-methyltransferase_activity
steroid biosynthetic process,
single-stranded DNA binding,
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001698 | Steroid_biosynthesis
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
single-stranded DNA binding,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
WRKY Transcription_Regulator(from PlantTFDB)
dephosphorylation,
steroid biosynthetic process,
| details | | CFinderM001706 | GH35 Glycoside_Hydrolases
ion transport,
| details | | CFinderM001708 | Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
| details | | CFinderM001751 | RLK-Pelle_LRR-II (from iTAK)
Arginine_and_proline_metabolism
ion transport,
phospholipid transport,
| details | | CFinderM001827 | ARID Transcription_Regulator(from iTAK)
GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
ion transport,
| details | | CFinderM001828 | ARID Transcription_Regulator(from iTAK)
ion transport,
intracellular,
| details | | CFinderM001843 | Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
PLATZ Transcription_Regulator(from iTAK)
protein complex,
microtubule,
TRAF Transcription_Regulator(from iTAK)
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
protein polymerization,
translational initiation,
microtubule-based process,
Pantothenate_and_CoA_biosynthesis
structural constituent of cytoskeleton,
| details | | CFinderM001871 | Steroid_biosynthesis
steroid biosynthetic process,
sterol_24-C-methyltransferase_activity
| details | | CFinderM001884 | single-stranded DNA binding,
DNA_replication
RNA processing,
| details | | CFinderM001886 | Steroid_biosynthesis
ubiquitin ligase complex,
sterol_24-C-methyltransferase_activity
dephosphorylation,
steroid biosynthetic process,
mRNA_surveillance_pathway
protein ubiquitination,
protein dephosphorylation,
| details | | CFinderM001896 | seryl-tRNA aminoacylation,
serine-tRNA ligase activity,
5S rRNA binding,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
| details |
4.Expression profilings |
