|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | GH43 Glycoside_Hydrolases | 0.003437339 | GFam | | TKL-Pl-6 (from iTAK) | 0.008006934 | GFam | | GH35 Glycoside_Hydrolases | 0.008006934 | GFam | | Inositol_phosphate_metabolism | 0.046912636 | KEGG | | Phosphatidylinositol_signaling_system | 0.046912636 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000102G1230 | - | AT1G02330 (1.70E-80) | | PH01000266G0160 | aminophospholipid ATPase 1 | AT5G04930 (0) | | PH01000299G0840 | beta-galactosidase 3 | AT4G36360 (0.00E+00) | | PH01000317G0890 | glycosyl hydrolase family protein 43 | AT3G49880 (1.00E-175) | | PH01000569G0500 | Eukaryotic aspartyl protease family protein | AT1G49050 (4.20E-82) | | PH01000600G0290 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | AT3G24715 (5.00E-118) | | PH01000655G0500 | farnesylated protein 3 | AT5G63530 (1.20E-46) | | PH01001796G0400 | cyclic nucleotide gated channel 1 | AT5G53130 (2.00E-164) | | PH01002680G0160 | 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases | AT4G33240 (0.00E+00) | | PH01004980G0030 | Protein phosphatase 2C family protein | AT3G51370 (5.00E-164) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000238 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM000239 | cullin-RING ubiquitin ligase complex,
glycogen_phosphorylase_activity
protein_binding,_bridging
actin filament binding,
phosphatidylserine biosynthetic process,
| details | | CFinderM000911 | intracellular,
Ribosome
translation,
PHD Transcription_Regulator(from iTAK)
structural constituent of ribosome,
protein import into nucleus,
| details | | CFinderM001213 | Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
| details | | CFinderM001215 | Valine,_leucine_and_isoleucine_biosynthesis
heme_a_biosynthetic_process
dihydroxy-acid dehydratase activity,
branched chain family amino acid biosynthetic process,
Pantothenate_and_CoA_biosynthesis
oxidoreductase activity, acting on the CH-CH group of donors,
Porphyrin_and_chlorophyll_metabolism
ubiquitin ligase complex,
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM001281 | phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
cellular protein metabolic process,
Phagosome
| details | | CFinderM001597 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001657 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
phosphatidylinositol metabolic process,
Phagosome
cellular protein metabolic process,
phosphatidylinositol phosphate kinase activity,
aspartic-type endopeptidase activity,
GH35 Glycoside_Hydrolases
phospholipid transport,
proteolysis,
metal ion binding,
| details | | CFinderM001658 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
| details | | CFinderM001706 | GH35 Glycoside_Hydrolases
ion transport,
| details | | CFinderM001751 | RLK-Pelle_LRR-II (from iTAK)
Arginine_and_proline_metabolism
ion transport,
phospholipid transport,
| details | | CFinderM001801 | GH17 Glycoside_Hydrolases
phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RNA_degradation
Arginine_and_proline_metabolism
Phagosome
| details | | CFinderM001809 | Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
| details | | CFinderM001827 | ARID Transcription_Regulator(from iTAK)
GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
ion transport,
| details | | CFinderM001828 | ARID Transcription_Regulator(from iTAK)
ion transport,
intracellular,
| details |
4.Expression profilings |
