CFinderM001215's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Valine,_leucine_and_isoleucine_biosynthesis0.004281852KEGG
heme_a_biosynthetic_process0.005513275GO:0006784
dihydroxy-acid dehydratase activity,0.006807207GO:0004160
branched chain family amino acid biosynthetic process,0.02065379GO:0009082
Pantothenate_and_CoA_biosynthesis0.030978KEGG
oxidoreductase activity, acting on the CH-CH group of donors,0.039077263GO:0016627
Porphyrin_and_chlorophyll_metabolism0.039795686KEGG
ubiquitin ligase complex,0.044732883GO:0000151
Ribosome_biogenesis_in_eukaryotes0.048368565KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G3080transducin family protein / WD-40 repeat family proteinAT3G21540 (0.00E+00)
PH01000435G0100cytochrome c oxidase 15AT5G56090 (3.00E-152)
PH01000703G0460plant U-box 9AT3G07360 (6.00E-114)
PH01001572G0270mitochondrial 28S ribosomal protein S29-relatedAT1G16870 (2.00E-144)
PH01003018G0200dehydratase familyAT3G23940 (0.00E+00)
PH01004980G0030Protein phosphatase 2C family proteinAT3G51370 (5.00E-164)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM001004IWS1 Transcription_Regulator(from iTAK)
heme_a_biosynthetic_process
threonyl-tRNA aminoacylation,
tRNA aminoacylation,
threonine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
ligase activity, forming aminoacyl-tRNA and related compounds,
oxidoreductase activity, acting on the CH-CH group of donors,
Oxidative_phosphorylation
nucleotide binding,
tRNA aminoacylation for protein translation,
details
CFinderM001213Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
details
CFinderM001544RLK-Pelle_LRR-VI-2 (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
nuclear pore,
RNA_transport
details
CFinderM001655transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
details
CFinderM001656GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
details
CFinderM001684heme_a_biosynthetic_process
peroxisomal membrane,
mitochondrial outer membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
transcription_corepressor_activity
details
CFinderM001744Ribosome_biogenesis_in_eukaryotes
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
threonine-tRNA ligase activity,
tRNA aminoacylation,
tRNA aminoacylation for protein translation,
cellular protein metabolic process,
RNA processing,
ligase activity, forming aminoacyl-tRNA and related compounds,
details
CFinderM001809Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
details

4.Expression profilings