PH01001572G0270's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G16870 : 2.00E-144
Blast annotation: mitochondrial 28S ribosomal protein S29-related
2.Location
Scaffold: PH01001572
Strand: -
| Region | Start | End |
| gene | 210928 | 216978 |
| mRNA | 210928 | 216978 |
| exon | 210928 | 211352 |
| exon | 211500 | 211672 |
| exon | 212302 | 212388 |
| exon | 212490 | 212744 |
| exon | 213392 | 213597 |
| exon | 214324 | 214487 |
| exon | 216118 | 216978 |
| CDS | 211244 | 211352 |
| CDS | 211500 | 211672 |
| CDS | 212302 | 212388 |
| CDS | 212490 | 212744 |
| CDS | 213392 | 213597 |
| CDS | 214324 | 214487 |
| CDS | 216118 | 216515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001215 | Valine,_leucine_and_isoleucine_biosynthesis heme_a_biosynthetic_process dihydroxy-acid dehydratase activity, branched chain family amino acid biosynthetic process, Pantothenate_and_CoA_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, Porphyrin_and_chlorophyll_metabolism ubiquitin ligase complex, Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) nuclear pore, RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10236.8 | DAP3 | 162 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.