CFinderM001004's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
IWS1 Transcription_Regulator(from iTAK)0.002997141GFam
heme_a_biosynthetic_process0.005513275GO:0006784
threonyl-tRNA aminoacylation,0.008267328GO:0006435
tRNA aminoacylation,0.02293073GO:0043039
threonine-tRNA ligase activity,0.024456508GO:0004829
Aminoacyl-tRNA_biosynthesis0.030290945KEGG
Porphyrin_and_chlorophyll_metabolism0.030290945KEGG
ligase activity, forming aminoacyl-tRNA and related compounds,0.031208497GO:0016876
oxidoreductase activity, acting on the CH-CH group of donors,0.031208497GO:0016627
Oxidative_phosphorylation0.043912148KEGG
nucleotide binding,0.044788775GO:0000166
tRNA aminoacylation for protein translation,0.047303717GO:0006418

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000435G0100cytochrome c oxidase 15AT5G56090 (3.00E-152)
PH01001201G0390polypyrimidine tract-binding protein 3AT1G43190 (4.00E-109)
PH01001248G0150Threonyl-tRNA synthetaseAT5G26830 (0.00E+00)
PH01001307G0060-AT2G14910 (2.00E-46)
PH01002277G0170Transcription elongation factor (TFIIS) family proteinAT5G05140 (8.90E-50)
PH01003431G0170Protein of unknown function (DUF630 and DUF632)AT4G35240 (2.30E-69)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000538GT61 GlycosylTransferases
RLK-Pelle_PERK-1 (from iTAK)
GT47 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
response to oxidative stress,
histidine_catabolic_process_to_glutamate_and_formamide
details
CFinderM000694IWS1 Transcription_Regulator(from iTAK)
details
CFinderM000797threonyl-tRNA aminoacylation,
tRNA aminoacylation,
microtubule cytoskeleton organization,
cytokinesis
Aminoacyl-tRNA_biosynthesis
Ribosome_biogenesis_in_eukaryotes
threonine-tRNA ligase activity,
cellular amino acid metabolic process,
tRNA aminoacylation for protein translation,
ligase activity, forming aminoacyl-tRNA and related compounds,
microtubule binding,
details
CFinderM000900phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,
details
CFinderM001118Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
HSF Transcription_Regulator(from PlantTFDB)
threonine-tRNA ligase activity,
tRNA aminoacylation,
C2H2 Transcription_Regulator(from PlantTFDB)
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
cellular protein metabolic process,
details
CFinderM001215Valine,_leucine_and_isoleucine_biosynthesis
heme_a_biosynthetic_process
dihydroxy-acid dehydratase activity,
branched chain family amino acid biosynthetic process,
Pantothenate_and_CoA_biosynthesis
oxidoreductase activity, acting on the CH-CH group of donors,
Porphyrin_and_chlorophyll_metabolism
ubiquitin ligase complex,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001282protein methylation,
intracellular,
methyltransferase activity,
nucleotide binding,
nucleic acid binding,
IWS1 Transcription_Regulator(from iTAK)
ribosome biogenesis,
transport,
details
CFinderM001397GT4 GlycosylTransferases
details
CFinderM001494GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
details
CFinderM001535TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
details
CFinderM001684heme_a_biosynthetic_process
peroxisomal membrane,
mitochondrial outer membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
transcription_corepressor_activity
details
CFinderM001744Ribosome_biogenesis_in_eukaryotes
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
threonine-tRNA ligase activity,
tRNA aminoacylation,
tRNA aminoacylation for protein translation,
cellular protein metabolic process,
RNA processing,
ligase activity, forming aminoacyl-tRNA and related compounds,
details

4.Expression profilings