PH01002277G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G05140 : 8.90E-50
Blast annotation: Transcription elongation factor (TFIIS) family protein
2.Location
Scaffold: PH01002277
Strand: +
| Region | Start | End |
| gene | 121334 | 127881 |
| mRNA | 121334 | 127881 |
| exon | 121334 | 122829 |
| exon | 122932 | 123000 |
| exon | 123083 | 123165 |
| exon | 123436 | 123491 |
| exon | 123588 | 123709 |
| exon | 123764 | 123839 |
| exon | 123931 | 124313 |
| exon | 124395 | 124536 |
| exon | 125225 | 127881 |
| CDS | 122278 | 122829 |
| CDS | 122932 | 123000 |
| CDS | 123083 | 123165 |
| CDS | 123436 | 123491 |
| CDS | 123588 | 123709 |
| CDS | 123764 | 123839 |
| CDS | 123931 | 124313 |
| CDS | 124395 | 124536 |
| CDS | 125225 | 125457 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001004 | IWS1 Transcription_Regulator(from iTAK) heme_a_biosynthetic_process threonyl-tRNA aminoacylation, tRNA aminoacylation, threonine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism ligase activity, forming aminoacyl-tRNA and related compounds, oxidoreductase activity, acting on the CH-CH group of donors, Oxidative_phosphorylation nucleotide binding, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001282 | protein methylation, intracellular, methyltransferase activity, nucleotide binding, nucleic acid binding, IWS1 Transcription_Regulator(from iTAK) ribosome biogenesis, transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | IWS1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08711.10 | Med26 | 193 | 240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.