PH01001307G0060's details annotation
1.Annotation
ICBR annotation: seed maturation protein PM23, putative, expressed
Blast result AT2G14910 : 2.00E-46
Blast annotation: -
2.Location
Scaffold: PH01001307
Strand: -
| Region | Start | End |
| gene | 60671 | 69294 |
| mRNA | 60671 | 69294 |
| exon | 60671 | 61041 |
| exon | 61215 | 61465 |
| exon | 61610 | 61717 |
| exon | 62300 | 62447 |
| exon | 64658 | 64863 |
| exon | 65940 | 65987 |
| exon | 66417 | 69294 |
| CDS | 60924 | 61041 |
| CDS | 61215 | 61465 |
| CDS | 61610 | 61717 |
| CDS | 62300 | 62447 |
| CDS | 64658 | 64863 |
| CDS | 65940 | 65987 |
| CDS | 66417 | 66617 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000900 | phosphopyruvate hydratase complex, glycolysis, phosphopyruvate hydratase activity, Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-6 (from iTAK) magnesium ion binding, argininosuccinate synthase activity, 6-phosphofructokinase complex, arginine biosynthetic process, |
| coexpression network | CFinderM001004 | IWS1 Transcription_Regulator(from iTAK) heme_a_biosynthetic_process threonyl-tRNA aminoacylation, tRNA aminoacylation, threonine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism ligase activity, forming aminoacyl-tRNA and related compounds, oxidoreductase activity, acting on the CH-CH group of donors, Oxidative_phosphorylation nucleotide binding, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001397 | GT4 GlycosylTransferases |
| coexpression network | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB) protein catabolic process, |
| coexpression network | CFinderM001535 | TAZ Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, Oxidative_phosphorylation peptidyl-prolyl cis-trans isomerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05542.10 | DUF760 | 71 | 152 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.