1.Module annotation (GSEA enrichment result)
Function Annotation FDR Gene Ontolog TAZ Transcription_Regulator(from iTAK) 0.001499508 GFam transcription cofactor activity, 0.016040642 GO:0003712 histone acetyltransferase activity, 0.016040642 GO:0004402 Oxidative_phosphorylation 0.023952081 KEGG peptidyl-prolyl cis-trans isomerase activity, 0.028461046 GO:0003755
2.Module member annotation
Gene ID Annotation Arabidopsis ortholog (Blast e-value) PH01000617G0160 - AT2G39580 (2.00E-139) PH01001307G0060 - AT2G14910 (2.00E-46) PH01001947G0400 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative AT4G02580 (9.00E-114) PH01002024G0310 PRLI-interacting factor, putative AT2G13690 (4.10E-76) PH01002687G0240 histone acetyltransferase of the CBP family 1 AT1G79000 (3.00E-151) PH01006208G0040 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein AT4G34960 (1.50E-85)
3.Direct connection functional modules
Module ID Function Annotation Overlap condition CFinderM000016 protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, details CFinderM000084 cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, details CFinderM000192 protein serine/threonine kinase activity, protein kinase activity, exonuclease activity, protein phosphorylation, transferase activity, transferring phosphorus-containing groups, ATP binding, polysaccharide_binding RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK (from iTAK) ubiquitin ligase complex, RLK-Pelle_LRR-Xb-2 (from iTAK) details CFinderM000194 Group-Pl-3 (from iTAK) regulation of Rab GTPase activity, details CFinderM000561 GT4 GlycosylTransferases NADP_biosynthetic_process phosphorylation, NAD+ kinase activity, peptidyl-prolyl cis-trans isomerase activity, details CFinderM000642 details CFinderM000694 IWS1 Transcription_Regulator(from iTAK) details CFinderM000695 STE_STE11 (from iTAK) RLK-Pelle_RLCK-VIIa-1 (from iTAK) SNARE_interactions_in_vesicular_transport details CFinderM000768 peptidyl-prolyl cis-trans isomerase activity, details CFinderM000773 GT4 GlycosylTransferases phosphorylation, magnesium_ion_transport peptidyl-prolyl cis-trans isomerase activity, magnesium_ion_transmembrane_transporter_activity details CFinderM000900 phosphopyruvate hydratase complex, glycolysis, phosphopyruvate hydratase activity, Alanine,_aspartate_and_glutamate_metabolism TKL-Pl-6 (from iTAK) magnesium ion binding, argininosuccinate synthase activity, 6-phosphofructokinase complex, arginine biosynthetic process, details CFinderM001004 IWS1 Transcription_Regulator(from iTAK) heme_a_biosynthetic_process threonyl-tRNA aminoacylation, tRNA aminoacylation, threonine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism ligase activity, forming aminoacyl-tRNA and related compounds, oxidoreductase activity, acting on the CH-CH group of donors, Oxidative_phosphorylation nucleotide binding, tRNA aminoacylation for protein translation, details CFinderM001128 Galactose_metabolism Porphyrin_and_chlorophyll_metabolism details CFinderM001274 mitochondrial ribosome, protein folding, SNARE_interactions_in_vesicular_transport PHD Transcription_Regulator(from iTAK) details CFinderM001275 HB-other Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway details CFinderM001397 GT4 GlycosylTransferases details CFinderM001494 GRAS Transcription_Regulator(from PlantTFDB) protein catabolic process, details CFinderM001569 Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, details CFinderM001631 Pseudo ARR-B Transcription_Regulator(from iTAK) transaminase activity, transferase activity, transferring alkyl or aryl (other than methyl) groups, inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, peptidyl-prolyl cis-trans isomerase activity, two-component response regulator activity, details CFinderM001665 GT14 GlycosylTransferases chloride transport, ion channel activity, voltage-gated chloride channel activity, acetylglucosaminyltransferase activity, details CFinderM001788 protein folding, protein catabolic process, details CFinderM001834 phosphopyruvate hydratase complex, TAZ Transcription_Regulator(from iTAK) L-malate dehydrogenase activity, transcription cofactor activity, malate dehydrogenase activity, phosphopyruvate hydratase activity, histone acetyltransferase activity, malate metabolic process, cellular carbohydrate metabolic process, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) details
4.Expression profilings
Created with Highcharts 4.1.6 Gene expression profiling among different tissue samples 0 1 2 3 4 5 leaf_SRR2035212 leaf_SRR2035327 leaf_SRR4450543_CK leaf_SRR4450545_Dehydration leaf_SRR4450547_Dehydration leaf_SRR4450549_Cold leaf_SRR4450551_Cold Leaf-2 Leaf_ERR105068 Root_1 Root_3 Root_5 Root_ERR105075 Rhizome Rhizome_ERR105074 culm_SRR1187864 shoot_SAM_A shoot_MIN_C shoot_YNO_A shoot_YNO_C shoot_MNO_A shoot_MNO_C shoot_SAM_C shoot_YIN_A shoot_YIN_C shoot_MIN_A shoot_SRR3050072 shoot_SRR3056056 shoot_SRR3521411 Shoot_A2 Shoot_B1 Shoot_B3 Shoot_C2 Shoot_D1 Shoot_D3 Bud_1 Bud_3 panicle_early_ERR105069 panicle_flowering_ERR105071 PH01000617G0160 PH01001307G0060 PH01001947G0400 PH01002024G0310 PH01002687G0240 PH01006208G0040 Highcharts.com