|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | TAZ Transcription_Regulator(from iTAK) | 0.001499508 | GFam | | transcription cofactor activity, | 0.016040642 | GO:0003712 | | histone acetyltransferase activity, | 0.016040642 | GO:0004402 | | Oxidative_phosphorylation | 0.023952081 | KEGG | | peptidyl-prolyl cis-trans isomerase activity, | 0.028461046 | GO:0003755 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000617G0160 | - | AT2G39580 (2.00E-139) | | PH01001307G0060 | - | AT2G14910 (2.00E-46) | | PH01001947G0400 | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | AT4G02580 (9.00E-114) | | PH01002024G0310 | PRLI-interacting factor, putative | AT2G13690 (4.10E-76) | | PH01002687G0240 | histone acetyltransferase of the CBP family 1 | AT1G79000 (3.00E-151) | | PH01006208G0040 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT4G34960 (1.50E-85) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000192 | protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
| details | | CFinderM000194 | Group-Pl-3 (from iTAK)
regulation of Rab GTPase activity,
| details | | CFinderM000561 | GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000642 | | details | | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK)
| details | | CFinderM000695 | STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport
| details | | CFinderM000768 | peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000773 | GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM000900 | phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,
| details | | CFinderM001004 | IWS1 Transcription_Regulator(from iTAK)
heme_a_biosynthetic_process
threonyl-tRNA aminoacylation,
tRNA aminoacylation,
threonine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
ligase activity, forming aminoacyl-tRNA and related compounds,
oxidoreductase activity, acting on the CH-CH group of donors,
Oxidative_phosphorylation
nucleotide binding,
tRNA aminoacylation for protein translation,
| details | | CFinderM001128 | Galactose_metabolism
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001274 | mitochondrial ribosome,
protein folding,
SNARE_interactions_in_vesicular_transport
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
| details | | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
| details | | CFinderM001631 | Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
| details | | CFinderM001665 | GT14 GlycosylTransferases
chloride transport,
ion channel activity,
voltage-gated chloride channel activity,
acetylglucosaminyltransferase activity,
| details | | CFinderM001788 | protein folding,
protein catabolic process,
| details | | CFinderM001834 | phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
