PH01000617G0160's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G39580 : 2.00E-139
Blast annotation: -
2.Location
Scaffold: PH01000617
Strand: -
| Region | Start | End |
| gene | 102377 | 112079 |
| mRNA | 102377 | 112079 |
| exon | 102377 | 104806 |
| exon | 105770 | 105895 |
| exon | 106015 | 106110 |
| exon | 106544 | 106824 |
| exon | 106949 | 107449 |
| exon | 107971 | 108550 |
| exon | 108605 | 108835 |
| exon | 109723 | 110894 |
| exon | 111042 | 111132 |
| exon | 111929 | 112079 |
| CDS | 103016 | 104806 |
| CDS | 105770 | 105895 |
| CDS | 106015 | 106110 |
| CDS | 106544 | 106824 |
| CDS | 106949 | 107449 |
| CDS | 107971 | 108550 |
| CDS | 108605 | 108835 |
| CDS | 109723 | 110894 |
| CDS | 111042 | 111132 |
| CDS | 111929 | 112072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001397 | GT4 GlycosylTransferases |
| coexpression network | CFinderM001535 | TAZ Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, Oxidative_phosphorylation peptidyl-prolyl cis-trans isomerase activity, |
| coexpression network | CFinderM001665 | GT14 GlycosylTransferases chloride transport, ion channel activity, voltage-gated chloride channel activity, acetylglucosaminyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10650.8 | zf-C3H1 | 868 | 887 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.