Annotation of co-expression genes

PH01006208G0040's details annotation

1.Annotation

ICBR annotation: peptidyl-prolyl cis-trans isomerase, putative, expressed

Blast result AT4G34960 : 1.50E-85
Blast annotation: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

2.Location

Scaffold: PH01006208
Strand: -

RegionStartEnd
gene2113729939
mRNA2113729939
exon2113724735
exon2481724892
exon2640326585
exon2667426697
exon2820528252
exon2837528450
exon2910829939
CDS2457324735
CDS2481724892
CDS2640326585
CDS2667426697
CDS2820528252
CDS2837528450
CDS2910829185

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
coexpression networkCFinderM000084cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
coexpression networkCFinderM000192protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
coexpression networkCFinderM000194Group-Pl-3 (from iTAK)
regulation of Rab GTPase activity,
coexpression networkCFinderM000561GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
coexpression networkCFinderM000642
coexpression networkCFinderM000695STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport
coexpression networkCFinderM000768peptidyl-prolyl cis-trans isomerase activity,
coexpression networkCFinderM000773GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity
coexpression networkCFinderM001128Galactose_metabolism
Porphyrin_and_chlorophyll_metabolism
coexpression networkCFinderM001274mitochondrial ribosome,
protein folding,
SNARE_interactions_in_vesicular_transport
PHD Transcription_Regulator(from iTAK)
coexpression networkCFinderM001275HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
coexpression networkCFinderM001397GT4 GlycosylTransferases
coexpression networkCFinderM001535TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
coexpression networkCFinderM001631Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
coexpression networkCFinderM001788protein folding,
protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00160.20Pro_isomerase43203

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0006457protein folding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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