|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein folding, | 0.009222457 | GO:0006457 | | protein catabolic process, | 0.044814254 | GO:0030163 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000192 | protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
| details | | CFinderM000194 | Group-Pl-3 (from iTAK)
regulation of Rab GTPase activity,
| details | | CFinderM000561 | GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000642 | | details | | CFinderM000695 | STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport
| details | | CFinderM000768 | peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000773 | GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM001082 | IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
| details | | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
| details | | CFinderM001128 | Galactose_metabolism
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001227 | RLK-Pelle_RLCK-VIIa-1 (from iTAK)
Ubiquitin_mediated_proteolysis
Amino_sugar_and_nucleotide_sugar_metabolism
Galactose_metabolism
galactose metabolic process,
| details | | CFinderM001274 | mitochondrial ribosome,
protein folding,
SNARE_interactions_in_vesicular_transport
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
| details | | CFinderM001353 | TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001405 | transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
Oxidative_phosphorylation
protein catabolic process,
| details | | CFinderM001443 | Fatty_acid_biosynthesis
3-oxoacyl-[acyl-carrier-protein] synthase activity,
translational termination,
mRNA_surveillance_pathway
translation release factor activity, codon specific,
lipid biosynthetic process,
| details | | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
| details | | CFinderM001498 | mTERF Transcription_Regulator(from iTAK)
| details | | CFinderM001535 | TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001570 | cis-Golgi network,
transcription factor TFIID complex,
Basal_transcription_factors
| details | | CFinderM001594 | Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,
| details | | CFinderM001618 | transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
protein catabolic process,
| details | | CFinderM001631 | Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
| details | | CFinderM001721 | STE_STE11 (from iTAK)
outer membrane,
Endocytosis
| details | | CFinderM001816 | transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
| details | | CFinderM001837 | Ribosome
ribosome biogenesis,
ribonucleoprotein complex,
large ribosomal subunit,
| details | | CFinderM001840 | transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
| details | | CFinderM001866 | sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001867 | Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),
| details | | CFinderM001879 | cis-Golgi network,
| details |
4.Expression profilings |
