|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | HB-other Transcription_Regulator(from PlantTFDB) | 0.008232357 | GFam | | mRNA_surveillance_pathway | 0.029129699 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000047G1410 | Tudor/PWWP/MBT domain-containing protein | AT5G23150 (1.20E-51) | | PH01000140G1080 | binding to TOMV RNA 1L (long form) | AT5G04430 (1.00E-101) | | PH01000258G0070 | tonneau 2 (TON2) | AT5G18580 (0.00E+00) | | PH01001720G0330 | NAD(P)-binding Rossmann-fold superfamily protein | AT2G05990 (2.60E-69) | | PH01002482G0180 | VEFS-Box of polycomb protein | AT5G51230 (7.60E-32) | | PH01002722G0070 | 2-oxoacid dehydrogenases acyltransferase family protein | AT1G34430 (6.50E-40) | | PH01006208G0040 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT4G34960 (1.50E-85) | | PH01006816G0010 | Homeodomain-like superfamily protein | AT4G02560 (4.80E-56) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000192 | protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
| details | | CFinderM000194 | Group-Pl-3 (from iTAK)
regulation of Rab GTPase activity,
| details | | CFinderM000561 | GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000593 | nicotinate nucleotide salvage,
diphosphomevalonate decarboxylase activity,
nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
NAD biosynthetic process,
Nicotinate_and_nicotinamide_metabolism
isoprenoid biosynthetic process,
Terpenoid_backbone_biosynthesis
large ribosomal subunit,
| details | | CFinderM000642 | | details | | CFinderM000695 | STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport
| details | | CFinderM000768 | peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000773 | GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM001128 | Galactose_metabolism
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001274 | mitochondrial ribosome,
protein folding,
SNARE_interactions_in_vesicular_transport
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001438 | HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
| details | | CFinderM001535 | TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001631 | Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
| details | | CFinderM001635 | Ribosome
translation,
Ribosome
intracellular,
C3H Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001788 | protein folding,
protein catabolic process,
| details | | CFinderM001823 | large ribosomal subunit,
| details | | CFinderM001840 | transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
| details |
4.Expression profilings |
