PH01006816G0010's details annotation
1.Annotation
ICBR annotation: homeobox domain containing protein, expressed
Blast result AT4G02560 : 4.80E-56
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01006816
Strand: +
| Region | Start | End |
| gene | 538 | 8254 |
| mRNA | 538 | 8254 |
| exon | 538 | 565 |
| exon | 904 | 1034 |
| exon | 1329 | 1825 |
| exon | 2746 | 2797 |
| exon | 2872 | 2912 |
| exon | 3035 | 3114 |
| exon | 3977 | 4423 |
| exon | 6224 | 6309 |
| exon | 6362 | 6778 |
| exon | 6972 | 8254 |
| CDS | 538 | 565 |
| CDS | 904 | 1034 |
| CDS | 1329 | 1825 |
| CDS | 2746 | 2797 |
| CDS | 2872 | 2912 |
| CDS | 3035 | 3114 |
| CDS | 3977 | 4423 |
| CDS | 6224 | 6309 |
| CDS | 6362 | 6778 |
| CDS | 6972 | 8090 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway |
| coexpression network | CFinderM001438 | HB-other Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 11 | 67 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.