|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Galactose_metabolism | 0.047758885 | KEGG | | Porphyrin_and_chlorophyll_metabolism | 0.047758885 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000006G2010 | CRT (chloroquine-resistance transporter)-like transporter 2 | AT4G24460 (4.40E-90) | | PH01000035G0630 | - | - (-) | | PH01000190G0550 | NAD(P)-binding Rossmann-fold superfamily protein | AT4G13250 (3.00E-99) | | PH01000360G0740 | RING/FYVE/PHD-type zinc finger family protein | AT3G43230 (3.00E-163) | | PH01000432G0460 | Ribonuclease inhibitor | AT3G26000 (7.20E-66) | | PH01000530G0600 | UDP-D-glucose/UDP-D-galactose 4-epimerase 2 | AT4G23920 (7.00E-163) | | PH01001100G0250 | WRKY DNA-binding protein 75 | AT5G13080 (3.40E-42) | | PH01001631G0230 | RING/U-box superfamily protein | AT1G78420 (2.70E-53) | | PH01003059G0240 | SPOC domain / Transcription elongation factor S-II protein | AT5G11430 (7.00E-131) | | PH01006208G0040 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT4G34960 (1.50E-85) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000192 | protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
| details | | CFinderM000194 | Group-Pl-3 (from iTAK)
regulation of Rab GTPase activity,
| details | | CFinderM000530 | RLK-Pelle_LRR-XIV (from iTAK)
transmembrane transport,
GRAS Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000531 | transmembrane transport,
Plant_hormone_signal_transduction
| details | | CFinderM000561 | GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000642 | | details | | CFinderM000695 | STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport
| details | | CFinderM000768 | peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000773 | GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM001143 | endoplasmic reticulum membrane,
protein N-linked glycosylation via asparagine,
Valine,_leucine_and_isoleucine_degradation
Benzoate_degradation
Various_types_of_N-glycan_biosynthesis
Biosynthesis_of_unsaturated_fatty_acids
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
N-Glycan_biosynthesis
response to stress,
| details | | CFinderM001274 | mitochondrial ribosome,
protein folding,
SNARE_interactions_in_vesicular_transport
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
| details | | CFinderM001324 | Valine,_leucine_and_isoleucine_degradation
Benzoate_degradation
metabolic process,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_metabolism
alpha-Linolenic_acid_metabolism
| details | | CFinderM001325 | galactose metabolic process,
UDP-glucose 4-epimerase activity,
cellular metabolic process,
RNA_degradation
Amino_sugar_and_nucleotide_sugar_metabolism
Galactose_metabolism
| details | | CFinderM001363 | GT20 GlycosylTransferases
mitochondrial inner membrane,
Porphyrin_and_chlorophyll_metabolism
Starch_and_sucrose_metabolism
| details | | CFinderM001380 | Valine,_leucine_and_isoleucine_degradation
RLK-Pelle_LRR-XIV (from iTAK)
Benzoate_degradation
GRAS Transcription_Regulator(from PlantTFDB)
Fatty_acid_metabolism
Biosynthesis_of_unsaturated_fatty_acids
alpha-Linolenic_acid_metabolism
Peroxisome
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001535 | TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
| details | | CFinderM001631 | Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
| details | | CFinderM001788 | protein folding,
protein catabolic process,
| details |
4.Expression profilings |
