PH01000190G0550's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
Blast result AT4G13250 : 3.00E-99
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000190
Strand: +
| Region | Start | End |
| gene | 370870 | 374969 |
| mRNA | 370870 | 374969 |
| exon | 370870 | 371391 |
| exon | 371742 | 371841 |
| exon | 372116 | 372177 |
| exon | 372425 | 372503 |
| exon | 373074 | 373209 |
| exon | 373798 | 373993 |
| exon | 374172 | 374240 |
| exon | 374392 | 374531 |
| exon | 374695 | 374817 |
| exon | 374848 | 374969 |
| CDS | 371092 | 371391 |
| CDS | 371742 | 371841 |
| CDS | 372116 | 372177 |
| CDS | 372425 | 372503 |
| CDS | 373074 | 373209 |
| CDS | 373798 | 373993 |
| CDS | 374172 | 374240 |
| CDS | 374392 | 374531 |
| CDS | 374695 | 374817 |
| CDS | 374848 | 374938 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001128 | Galactose_metabolism Porphyrin_and_chlorophyll_metabolism |
| coexpression network | CFinderM001363 | GT20 GlycosylTransferases mitochondrial inner membrane, Porphyrin_and_chlorophyll_metabolism Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 251 | 399 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Porphyrin and chlorophyll metabolism | chlorophyll(ide) b reductase [EC:1.1.1.294] | ko00860 | K13606 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.