PH01000530G0600's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed
Blast result AT4G23920 : 7.00E-163
Blast annotation: UDP-D-glucose/UDP-D-galactose 4-epimerase 2
2.Location
Scaffold: PH01000530
Strand: -
| Region | Start | End |
| gene | 410921 | 415445 |
| mRNA | 410921 | 415445 |
| exon | 410921 | 411223 |
| exon | 411388 | 411479 |
| exon | 411556 | 411638 |
| exon | 411798 | 411882 |
| exon | 412033 | 412260 |
| exon | 412354 | 412455 |
| exon | 412531 | 412601 |
| exon | 412847 | 412871 |
| exon | 412984 | 413119 |
| exon | 413905 | 413954 |
| exon | 415050 | 415445 |
| CDS | 411130 | 411223 |
| CDS | 411388 | 411479 |
| CDS | 411556 | 411638 |
| CDS | 411798 | 411882 |
| CDS | 412033 | 412260 |
| CDS | 412354 | 412455 |
| CDS | 412531 | 412601 |
| CDS | 412847 | 412871 |
| CDS | 412984 | 413119 |
| CDS | 413905 | 413954 |
| CDS | 415050 | 415244 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001128 | Galactose_metabolism Porphyrin_and_chlorophyll_metabolism |
| coexpression network | CFinderM001325 | galactose metabolic process, UDP-glucose 4-epimerase activity, cellular metabolic process, RNA_degradation Amino_sugar_and_nucleotide_sugar_metabolism Galactose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16363.4 | GDP_Man_Dehyd | 10 | 335 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Galactose metabolism | UDP-glucose 4-epimerase [EC:5.1.3.2] | ko00052 | K01784 |
| Amino sugar and nucleotide sugar metabolism | UDP-glucose 4-epimerase [EC:5.1.3.2] | ko00520 | K01784 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003978 | UDP-glucose 4-epimerase activity |
| GO:0006012 | galactose metabolic process |
| GO:0044237 | cellular metabolic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.