PH01001720G0330's details annotation
1.Annotation
ICBR annotation: enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed
Blast result AT2G05990 : 2.60E-69
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001720
Strand: -
| Region | Start | End |
| gene | 251029 | 256398 |
| mRNA | 251029 | 256398 |
| exon | 251029 | 251219 |
| exon | 251339 | 251437 |
| exon | 252178 | 252235 |
| exon | 253068 | 253142 |
| exon | 253270 | 253317 |
| exon | 253399 | 253483 |
| exon | 253596 | 253651 |
| exon | 253736 | 253845 |
| exon | 255287 | 256398 |
| CDS | 251089 | 251219 |
| CDS | 251339 | 251437 |
| CDS | 252178 | 252235 |
| CDS | 253068 | 253142 |
| CDS | 253270 | 253317 |
| CDS | 253399 | 253483 |
| CDS | 253596 | 253651 |
| CDS | 253736 | 253845 |
| CDS | 255287 | 255536 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000593 | nicotinate nucleotide salvage, diphosphomevalonate decarboxylase activity, nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, NAD biosynthetic process, Nicotinate_and_nicotinamide_metabolism isoprenoid biosynthetic process, Terpenoid_backbone_biosynthesis large ribosomal subunit, |
| coexpression network | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway |
| coexpression network | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB) protein catabolic process, |
| coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001823 | large ribosomal subunit, |
| coexpression network | CFinderM001840 | transcription factor TFIIF complex, STE_STE11 (from iTAK) diphosphomevalonate decarboxylase activity, ATP binding, histone deacetylase activity, histone deacetylation, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors Terpenoid_backbone_biosynthesis protein catabolic process, isoprenoid biosynthetic process, Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13561.5 | adh_short_C2 | 210 | 290 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.