CFinderM001083's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
MYB-related Transcription_Regulator(from iTAK)0.006060999GFam
MYB_related Transcription_Regulator(from PlantTFDB)0.006060999GFam
Pseudo ARR-B Transcription_Regulator(from iTAK)0.012824702GFam
protein import into mitochondrial inner membrane,0.013479168GO:0045039
transcription, DNA-dependent,0.013479168GO:0006351
nucleus,0.025201414GO:0005634
IWS1 Transcription_Regulator(from iTAK)0.025581405GFam
GNAT Transcription_Regulator(from iTAK)0.033167724GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000223G1060prenylated RAB acceptor 1.A1AT5G02040 (1.80E-78)
PH01000346G0710Acyl-CoA N-acyltransferases (NAT) superfamily proteinAT5G11340 (5.20E-67)
PH01000428G0040Duplicated homeodomain-like superfamily proteinAT3G52250 (1.00E-84)
PH01000444G0680FAD-linked oxidases family proteinAT5G06580 (6.50E-36)
PH01000528G0210Ribosomal protein L24e family proteinAT3G53020 (1.60E-51)
PH01000804G0180Tim10/DDP family zinc finger proteinAT2G29530 (1.60E-26)
PH01001028G0610FTSH protease 4AT2G26140 (0.00E+00)
PH01001030G0210Pre-mRNA splicing Prp18-interacting factorAT1G65660 (5.00E-102)
PH01001117G0100PSF2AT3G12530 (2.30E-77)
PH01001353G0060SPOC domain / Transcription elongation factor S-II proteinAT5G25520 (7.00E-126)
PH01001487G0250Cysteine proteinases superfamily proteinAT5G04250 (3.20E-76)
PH01001516G0020Duplicated homeodomain-like superfamily proteinAT3G52250 (2.80E-95)
PH01001577G0380RNA polymerase II transcription mediatorsAT4G00450 (2.30E-30)
PH01001603G0360-AT4G08510 (3.90E-24)
PH01001660G0380Transcription elongation factor (TFIIS) family proteinAT5G09850 (4.10E-55)
PH01003618G0130CCT motif -containing response regulator proteinAT5G61380 (1.10E-91)
PH01004447G0090-AT3G61800 (2.00E-118)
PH01006137G0060protein binding;zinc ion bindingAT5G51700 (7.40E-65)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000111protein insertion into membrane,
ATP citrate synthase activity,
succinate-CoA ligase (ADP-forming) activity,
regulation_of_anion_transport
voltage-gated anion channel activity,
anion transport,
details
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000183Oxidative_phosphorylation
mitochondrial intermembrane space,
protein import into mitochondrial inner membrane,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
copper chaperone activity,
ubiquinol-cytochrome-c reductase activity,
mitochondrial electron transport, ubiquinol to cytochrome c,
copper ion transport,
ATP synthesis coupled proton transport,
ribosome biogenesis,
hydrogen ion transmembrane transporter activity,
details
CFinderM000913Ribosome
translation,
Ribosome
intracellular,
cullin-RING ubiquitin ligase complex,
structural constituent of ribosome,
ubiquitin protein ligase binding,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
Ubiquitin_mediated_proteolysis
details
CFinderM001030protein import into mitochondrial inner membrane,
RLK-Pelle_L-LEC (from iTAK)
protein methylation,
details
CFinderM001031intracellular,
translation,
structural constituent of ribosome,
protein import into mitochondrial inner membrane,
Ribosome
RLK-Pelle_L-LEC (from iTAK)
large ribosomal subunit,
ribosome biogenesis,
details
CFinderM001082IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
details
CFinderM001329Endocytosis
selenium binding,
dephosphorylation,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
protein dephosphorylation,
cell redox homeostasis,
details
CFinderM001332protein import into mitochondrial inner membrane,
mitochondrial electron transport, ubiquinol to cytochrome c,
ubiquinol-cytochrome-c reductase activity,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
ATP synthesis coupled proton transport,
hydrogen ion transmembrane transporter activity,
details
CFinderM001405transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
Oxidative_phosphorylation
protein catabolic process,
details
CFinderM001494GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
details
CFinderM001618transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
protein catabolic process,
details
CFinderM001703Endocytosis
regulation of ARF GTPase activity,
ARF GTPase activator activity,
details
CFinderM001721STE_STE11 (from iTAK)
outer membrane,
Endocytosis
details
CFinderM001749phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
details
CFinderM001788protein folding,
protein catabolic process,
details
CFinderM001790regulation of translational initiation,
ribosome binding,
eukaryotic translation initiation factor 3 complex,
translation initiation factor activity,
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details
CFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001835MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,
details
CFinderM001840transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
details
CFinderM001844PLATZ Transcription_Regulator(from iTAK)
TRAF Transcription_Regulator(from iTAK)
microtubule,
protein complex,
Plant_hormone_signal_transduction
Phagosome
protein polymerization,
microtubule-based process,
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001867Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),
details

4.Expression profilings


Show details about module gene expression profiling