PH01000223G1060's details annotation
1.Annotation
ICBR annotation: prenylated rab acceptor, putative, expressed
Blast result AT5G02040 : 1.80E-78
Blast annotation: prenylated RAB acceptor 1.A1
2.Location
Scaffold: PH01000223
Strand: -
| Region | Start | End |
| gene | 735275 | 740308 |
| mRNA | 735275 | 740308 |
| exon | 735275 | 736358 |
| exon | 737976 | 738054 |
| exon | 738154 | 738194 |
| exon | 739250 | 740308 |
| CDS | 736268 | 736358 |
| CDS | 737976 | 738054 |
| CDS | 738154 | 738194 |
| CDS | 739250 | 739407 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB) protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03208.18 | PRA1 | 20 | 192 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.