PH01004447G0090's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G61800 : 2.00E-118
Blast annotation: -
2.Location
Scaffold: PH01004447
Strand: +
| Region | Start | End |
| gene | 59711 | 62320 |
| mRNA | 59711 | 62320 |
| exon | 59711 | 60161 |
| exon | 60258 | 62320 |
| CDS | 59910 | 60161 |
| CDS | 60258 | 62135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001329 | Endocytosis selenium binding, dephosphorylation, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, protein dephosphorylation, cell redox homeostasis, |
| coexpression network | CFinderM001703 | Endocytosis regulation of ARF GTPase activity, ARF GTPase activator activity, |
| coexpression network | CFinderM001790 | regulation of translational initiation, ribosome binding, eukaryotic translation initiation factor 3 complex, translation initiation factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09740.8 | DUF2043 | 421 | 521 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.