|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | phosphoribosylformylglycinamidine cyclo-ligase activity, | 0.008269267 | GO:0004641 | | autophagy, | 0.00855969 | GO:0006914 | | 'de novo' IMP biosynthetic process, | 0.00855969 | GO:0006189 | | cellular protein metabolic process, | 0.041917772 | GO:0044267 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000442G0350 | Ribosomal protein S5 domain 2-like superfamily protein | AT3G49080 (1.10E-90) | | PH01000588G0600 | TCP-1/cpn60 chaperonin family protein | AT5G20890 (0.00E+00) | | PH01000765G0580 | - | AT4G30790 (0.00E+00) | | PH01000985G0340 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) | AT3G55010 (3.40E-77) | | PH01001314G0520 | DNA-binding bromodomain-containing protein | AT5G55040 (4.60E-46) | | PH01001577G0380 | RNA polymerase II transcription mediators | AT4G00450 (2.30E-30) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000826 | dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
| details | | CFinderM001030 | protein import into mitochondrial inner membrane,
RLK-Pelle_L-LEC (from iTAK)
protein methylation,
| details | | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
| details | | CFinderM001134 | Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
| details | | CFinderM001269 | regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
| details | | CFinderM001428 | nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
| details | | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001834 | phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
