PH01000985G0340's details annotation
1.Annotation
ICBR annotation: phosphoribosylformylglycinamidine synthase, putative, expressed
Blast result AT3G55010 : 3.40E-77
Blast annotation: phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
2.Location
Scaffold: PH01000985
Strand: -
| Region | Start | End |
| gene | 208662 | 214700 |
| mRNA | 208662 | 214700 |
| exon | 208662 | 209021 |
| exon | 209596 | 209655 |
| exon | 209768 | 209869 |
| exon | 209946 | 210040 |
| exon | 210505 | 214700 |
| CDS | 208803 | 209021 |
| CDS | 209596 | 209655 |
| CDS | 209768 | 209869 |
| CDS | 209946 | 210040 |
| CDS | 210505 | 210661 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001269 | regulation of translational initiation, 'de novo' IMP biosynthetic process, autophagy, phosphoribosylformylglycinamidine cyclo-ligase activity, eukaryotic translation initiation factor 3 complex, cytoplasm, ribosome binding, |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
| coexpression network | CFinderM001749 | phosphoribosylformylglycinamidine cyclo-ligase activity, autophagy, 'de novo' IMP biosynthetic process, cellular protein metabolic process, |
| coexpression network | CFinderM001773 | Group-Pl-3 (from iTAK) phosphoribosylformylglycinamidine cyclo-ligase activity, 'de novo' IMP biosynthetic process, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00586.23 | AIRS | 57 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004641 | phosphoribosylformylglycinamidine cyclo-ligase activity |
| GO:0005737 | cytoplasm |
| GO:0006189 | 'de novo' IMP biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.