|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Group-Pl-3 (from iTAK) | 0.000749988 | GFam | | phosphoribosylformylglycinamidine cyclo-ligase activity, | 0.016476476 | GO:0004641 | | 'de novo' IMP biosynthetic process, | 0.022042763 | GO:0006189 | | intracellular, | 0.040250659 | GO:0005622 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000154G1540 | Protein kinase superfamily protein | AT2G37840 (5.10E-68) | | PH01000442G0350 | Ribosomal protein S5 domain 2-like superfamily protein | AT3G49080 (1.10E-90) | | PH01000588G0600 | TCP-1/cpn60 chaperonin family protein | AT5G20890 (0.00E+00) | | PH01000882G0090 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | AT5G60980 (5.30E-67) | | PH01000985G0340 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) | AT3G55010 (3.40E-77) | | PH01002740G0130 | - | - (-) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000144 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM001039 | acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
| details | | CFinderM001131 | | details | | CFinderM001134 | Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
| details | | CFinderM001269 | regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
| details | | CFinderM001282 | protein methylation,
intracellular,
methyltransferase activity,
nucleotide binding,
nucleic acid binding,
IWS1 Transcription_Regulator(from iTAK)
ribosome biogenesis,
transport,
| details | | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
| details | | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
| details | | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
| details | | CFinderM001749 | phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
| details | | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
| details | | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
| details |
4.Expression profilings |
