|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | ornithine carbamoyltransferase activity, | 0.005570053 | GO:0004585 | | phosphoribosyl-AMP cyclohydrolase activity, | 0.005570053 | GO:0004635 | | ornithine_metabolic_process | 0.006431853 | GO:0006591 | | carboxyl- or carbamoyltransferase activity, | 0.009280811 | GO:0016743 | | histone deacetylase activity, | 0.011133841 | GO:0004407 | | histone deacetylation, | 0.01285647 | GO:0016575 | | Histidine_metabolism | 0.015719018 | KEGG | | histidine biosynthetic process, | 0.016060043 | GO:0000105 | | Arginine_and_proline_metabolism | 0.024120183 | KEGG | | cellular amino acid metabolic process, | 0.037628053 | GO:0006520 | | cellular protein metabolic process, | 0.037745696 | GO:0044267 | | amino acid binding, | 0.043295963 | GO:0016597 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000144 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000204 | CMGC_CLK (from iTAK)
histone deacetylation,
ubiquitin ligase complex,
histone deacetylase activity,
| details | | CFinderM000341 | exosome_(RNase_complex)
COP9_signalosome
| details | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000692 | CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
| details | | CFinderM000693 | ornithine_metabolic_process
histone deacetylation,
protein import into nucleus,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
protein transporter activity,
amino acid binding,
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM000995 | nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
| details | | CFinderM001039 | acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
| details | | CFinderM001068 | protein import into nucleus,
histone deacetylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
histone deacetylase activity,
| details | | CFinderM001131 | | details | | CFinderM001149 | ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001367 | histone deacetylation,
protein import into nucleus,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
histone deacetylase activity,
| details | | CFinderM001502 | SET Transcription_Regulator(from iTAK)
ribonucleoprotein complex,
nucleus,
histone_lysine_methylation
RNA processing,
| details | | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
| details | | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
| details | | CFinderM001758 | nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001761 | large ribosomal subunit,
intracellular,
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001831 | | details | | CFinderM001832 | histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
| details | | CFinderM001875 | histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
| details | | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
| details |
4.Expression profilings |
