CFinderM001131's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000181G1330ubiquitin-conjugating enzyme 32AT3G17000 (7.90E-92)
PH01000261G0790galacturonosyltransferase 7AT2G38650 (6.20E-28)
PH01000496G0080FAD/NAD(P)-binding oxidoreductase family proteinAT5G49555 (0.00E+00)
PH01000547G0050Pentatricopeptide repeat (PPR) superfamily proteinAT3G49710 (0.00E+00)
PH01002740G0130-- (-)
PH01004194G0060Tetratricopeptide repeat (TPR)-like superfamily proteinAT1G71490 (6.00E-138)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000144protein binding,
acid-amino acid ligase activity,
details
CFinderM000407MutLalpha_complex
Mismatch_repair
Mismatch_repair
mismatched DNA binding,
details
CFinderM000408Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
details
CFinderM000587protein binding,
acid-amino acid ligase activity,
details
CFinderM000691ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
details
CFinderM000717tRNA processing,
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001039acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
details
CFinderM001079SOS_response
DNA metabolic process,
cellular protein metabolic process,
details
CFinderM001110Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
details
CFinderM001414PHD Transcription_Regulator(from iTAK)
details
CFinderM001415PHD Transcription_Regulator(from iTAK)
details
CFinderM001452'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
details
CFinderM001510Ribosome_biogenesis_in_eukaryotes
RNA processing,
acid-amino acid ligase activity,
details
CFinderM001516Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001517N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
details
CFinderM001519details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001773Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
details
CFinderM001848Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
details
CFinderM001882Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples01234leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000181G1330PH01000261G0790PH01000496G0080PH01000547G0050PH01002740G0130PH01004194G0060Highcharts.com