PH01002740G0130's details annotation
1.Annotation
ICBR annotation: OsPOP8 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002740
Strand: -
| Region | Start | End |
| gene | 60613 | 63587 |
| mRNA | 60613 | 63587 |
| exon | 60613 | 61123 |
| exon | 61573 | 61650 |
| exon | 61716 | 61883 |
| exon | 62299 | 62377 |
| exon | 62808 | 62897 |
| exon | 63326 | 63587 |
| CDS | 60644 | 61123 |
| CDS | 61573 | 61650 |
| CDS | 61716 | 61883 |
| CDS | 62299 | 62377 |
| CDS | 62808 | 62897 |
| CDS | 63326 | 63384 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000144 | protein binding, acid-amino acid ligase activity, |
| coexpression network | CFinderM000408 | Group-Pl-3 (from iTAK) histidine_catabolic_process_to_glutamate_and_formamide hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides, |
| coexpression network | CFinderM000691 | ornithine carbamoyltransferase activity, phosphoribosyl-AMP cyclohydrolase activity, ornithine_metabolic_process carboxyl- or carbamoyltransferase activity, histone deacetylase activity, histone deacetylation, Histidine_metabolism histidine biosynthetic process, Arginine_and_proline_metabolism cellular amino acid metabolic process, cellular protein metabolic process, amino acid binding, |
| coexpression network | CFinderM000717 | tRNA processing, |
| coexpression network | CFinderM001039 | acetyl-CoA carboxylase activity, biotin_carboxylase_activity Fatty_acid_biosynthesis Propanoate_metabolism Pyruvate_metabolism cytokinesis microtubule cytoskeleton organization, ligase activity, microtubule binding, |
| coexpression network | CFinderM001131 | |
| coexpression network | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity, cellular amino acid biosynthetic process, cellular amino acid metabolic process, |
| coexpression network | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity, histidine biosynthetic process, RNA modification, pseudouridine synthesis, nuclear pore, |
| coexpression network | CFinderM001773 | Group-Pl-3 (from iTAK) phosphoribosylformylglycinamidine cyclo-ligase activity, 'de novo' IMP biosynthetic process, intracellular, |
| coexpression network | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis C5-Branched_dibasic_acid_metabolism SBP Transcription_Regulator(from PlantTFDB) Pantothenate_and_CoA_biosynthesis Butanoate_metabolism branched chain family amino acid biosynthetic process, acetolactate synthase activity, |
| coexpression network | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis C5-Branched_dibasic_acid_metabolism branched chain family amino acid biosynthetic process, SBP Transcription_Regulator(from PlantTFDB) Butanoate_metabolism Pantothenate_and_CoA_biosynthesis acetolactate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.